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    ygiM putative signal transduction protein (SH3 domain) [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 947555, updated on 17-Dec-2024

    Summary

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    Official Symbol
    ygiM
    Official Full Name
    putative signal transduction protein (SH3 domain)
    Primary source
    ECOCYC:EG12434
    Locus tag
    b3055
    See related
    ASAP:ABE-0010028
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ecfG; ECK3045; htrG
    Summary
    The first 22 aa are predicted to be a type I signal peptide. [More information is available at EcoGene: EG12434]. HtrG is a protein with a possible extracytoplasmic function . [More information is available at EcoCyc: EG12434].
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    Genomic context

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    Sequence:
    NC_000913.3 (3201207..3201827)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene fused glutamine synthetase deadenylase/glutamine synthetase adenylyltransferase Neighboring gene inorganic triphosphatase Neighboring gene fused CCA tRNA nucleotidyltransferase/phosphohydrolase Neighboring gene undecaprenyl pyrophosphate phosphatase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Systematic analysis of native membrane protein complexes in Escherichia coli. Maddalo G, et al. J Proteome Res, 2011 Apr 1. PMID 21210718
    2. Characterization of the Escherichia coli sigma E regulon. Dartigalongue C, et al. J Biol Chem, 2001 Jun 15. PMID 11274153
    3. Conserved and variable functions of the sigmaE stress response in related genomes. Rhodius VA, et al. PLoS Biol, 2006 Jan. PMID 16336047, Free PMC Article
    4. Comparison of SDS- and methanol-assisted protein solubilization and digestion methods for Escherichia coli membrane proteome analysis by 2-D LC-MS/MS. Zhang N, et al. Proteomics, 2007 Feb. PMID 17309111
    5. Absolute protein expression profiling estimates the relative contributions of transcriptional and translational regulation. Lu P, et al. Nat Biotechnol, 2007 Jan. PMID 17187058

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Component Evidence Code Pubs
    located_in cytosol IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in plasma membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    putative signal transduction protein (SH3 domain)

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      3201207..3201827
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_417527.1 putative signal transduction protein (SH3 domain) [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_417527.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      W1WXF6
      Conserved Domains (1) summary
      PRK10884
      Location:1 → 206
      PRK10884; SH3 domain-containing protein; Provisional
    Nucleotide Protein
    Heading Accession and Version

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