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    ygjQ DUF218 domain-containing protein YgjQ [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 947598, updated on 3-Dec-2024

    Summary

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    Official Symbol
    ygjQ
    Official Full Name
    DUF218 domain-containing protein YgjQ
    Primary source
    ECOCYC:G7605
    Locus tag
    b3086
    See related
    ASAP:ABE-0010142
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK3076
    Summary
    ydcF and ycbC (COG1434) and sanA and yjgQ (COG2949) are four members of the DUF218 superfamily (PF02698). [More information is available at EcoGene: EG12728].
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    Genomic context

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    Sequence:
    NC_000913.3 (3236540..3237232)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene 23S rRNA m(2)G1835 methyltransferase Neighboring gene putative metal-dependent hydrolase Neighboring gene putative oxidoreductase YgjR Neighboring gene putative membrane-bound redox modulator Alx

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The Escherichia coli YdcF binds S-adenosyl-L-methionine and adopts an alpha/beta-fold characteristic of nucleotide-utilizing enzymes. Chao KL, et al. Proteins, 2008 Jul. PMID 18393394
    2. Membranome: a database for proteome-wide analysis of single-pass membrane proteins. Lomize AL, et al. Nucleic Acids Res, 2017 Jan 4. PMID 27510400, Free PMC Article
    3. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article
    4. The complete genome sequence of Escherichia coli K-12. Blattner FR, et al. Science, 1997 Sep 5. PMID 9278503
    5. Escherichia coli K-12: a cooperatively developed annotation snapshot--2005. Riley M, et al. Nucleic Acids Res, 2006. PMID 16397293, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    is_active_in plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in plasma membrane RCA
    inferred from Reviewed Computational Analysis
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    DUF218 domain-containing protein YgjQ

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      3236540..3237232
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_417557.1 DUF218 domain-containing protein YgjQ [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_417557.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A6M9WYD8
      Conserved Domains (1) summary
      COG2949
      Location:2 → 230
      SanA; Uncharacterized periplasmic protein SanA, affects membrane permeability for vancomycin [Cell wall/membrane/envelope biogenesis]
    Nucleotide Protein
    Heading Accession and Version

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