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    yqjD ribosome- and membrane-associated DUF883 domain-containing protein YqjD [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 947614, updated on 3-Dec-2024

    Summary

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    Official Symbol
    yqjD
    Official Full Name
    ribosome- and membrane-associated DUF883 domain-containing protein YqjD
    Primary source
    ECOCYC:G7612
    Locus tag
    b3098
    See related
    ASAP:ABE-0010192
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK3089
    Summary
    May be ribosome associated (Jiang, 2007). [More information is available at EcoGene: EG12743]. A yqjD mutant shows increased biofilm formation compared to wild type, but decreased biofilm formation when the derepressed conjugative plasmid R1drd19 is present . [More information is available at EcoCyc: G7612].
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    Genomic context

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    Sequence:
    NC_000913.3 (3249375..3249680)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene modulator protein MzrA Neighboring gene DUF1090 domain-containing protein YqjC Neighboring gene inner membrane protein YqjE Neighboring gene PF13997 family protein YqjK Neighboring gene DoxX family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. YqjD is an inner membrane protein associated with stationary-phase ribosomes in Escherichia coli. Yoshida H, et al. J Bacteriol, 2012 Aug. PMID 22661687, Free PMC Article
    2. The R1 conjugative plasmid increases Escherichia coli biofilm formation through an envelope stress response. Yang X, et al. Appl Environ Microbiol, 2008 May. PMID 18344336, Free PMC Article
    3. Isolation and identification of new inner membrane-associated proteins that localize to cell poles in Escherichia coli. Li G, et al. Mol Microbiol, 2012 Apr. PMID 22380631
    4. Cross-linking measurements of in vivo protein complex topologies. Zheng C, et al. Mol Cell Proteomics, 2011 Oct. PMID 21697552, Free PMC Article
    5. A complexomic study of Escherichia coli using two-dimensional blue native/SDS polyacrylamide gel electrophoresis. Lasserre JP, et al. Electrophoresis, 2006 Aug. PMID 16858726

    See all (12) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables ribosomal small subunit binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables ribosome binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cell pole IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in plasma membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    ribosome- and membrane-associated DUF883 domain-containing protein YqjD

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      3249375..3249680
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_417569.1 ribosome- and membrane-associated DUF883 domain-containing protein YqjD [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_417569.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A6C9QAH3
      Conserved Domains (1) summary
      COG4575
      Location:1 → 101
      ElaB; Membrane-anchored ribosome-binding protein, inhibits growth in stationary phase, ElaB/YqjD/DUF883 family [Translation, ribosomal structure and biogenesis]
    Nucleotide Protein
    Heading Accession and Version

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