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    yrdA hexapeptide repeat-containing protein YrdA [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 947775, updated on 3-Dec-2024

    Summary

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    Official Symbol
    yrdA
    Official Full Name
    hexapeptide repeat-containing protein YrdA
    Primary source
    ECOCYC:G7696
    Locus tag
    b3279
    See related
    ASAP:ABE-0010759
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK3266
    Summary
    The observed MW of YrdA is 19 kDa, consistent with the ALT_INIT. [More information is available at EcoGene: EG12838]. The expression of YrdA protein is induced by the addition of spermine to the growth media at pH 8.5 . [More information is available at EcoCyc: G7696].
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    Genomic context

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    Sequence:
    NC_000913.3 (3429236..3429790)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene tRNA-Ile Neighboring gene 16S ribosomal RNA Neighboring gene DUF1488 domain-containing protein YrdB Neighboring gene shikimate dehydrogenase Neighboring gene L-threonylcarbamoyladenylate synthase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Structures of the γ-class carbonic anhydrase homologue YrdA suggest a possible allosteric switch. Park HM, et al. Acta Crystallogr D Biol Crystallogr, 2012 Aug. PMID 22868757
    2. Prokaryotic carbonic anhydrases. Smith KS, et al. FEMS Microbiol Rev, 2000 Oct. PMID 10978542
    3. Polyamine stress at high pH in Escherichia coli K-12. Yohannes E, et al. BMC Microbiol, 2005 Oct 13. PMID 16223443, Free PMC Article
    4. The global transcriptional response of Escherichia coli to induced sigma 32 protein involves sigma 32 regulon activation followed by inactivation and degradation of sigma 32 in vivo. Zhao K, et al. J Biol Chem, 2005 May 6. PMID 15757896
    5. Enrichment of low abundance proteins of Escherichia coli by hydroxyapatite chromatography. Fountoulakis M, et al. Electrophoresis, 1999 Aug. PMID 10493123

    See all (11) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables identical protein binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables zinc ion binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    part_of protein-containing complex IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    hexapeptide repeat-containing protein YrdA

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      3429236..3429790
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_417738.4 hexapeptide repeat-containing protein YrdA [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_417738.4

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A2X3J9N6
      Conserved Domains (1) summary
      COG0663
      Location:2 → 184
      PaaY; Carbonic anhydrase or acetyltransferase, isoleucine patch superfamily [General function prediction only]
    Nucleotide Protein
    Heading Accession and Version

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