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    yhjD putative transporter YhjD [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 948033, updated on 3-Dec-2024

    Summary

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    Official Symbol
    yhjD
    Official Full Name
    putative transporter YhjD
    Primary source
    ECOCYC:EG12248
    Locus tag
    b3522
    See related
    ASAP:ABE-0011505
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK3507
    Summary
    A point mutation in yhjD confering an R134C substitution was isolated repeatedly as a suppressor of the lethal KDO null phenotype of a gutQ kdsD double mutant and shown to permit the deletion of msbA, suggesting the mutant can export toxic lipid IV-A accumulating in the KDO mutant (Mamat, 2007). yihY and yhjD are paralogs. [More information is available at EcoGene: EG12248]. YhjD is an inner membrane protein with six predicted transmembrane domains; the C-terminus is located in the cytoplasm . [More information is available at EcoCyc: EG12248].
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    Genomic context

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    Sequence:
    NC_000913.3 (3673362..3674375)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene putative DNA-binding transcriptional regulator YhjB Neighboring gene putative DNA-binding transcriptional regulator YhjC Neighboring gene putative transporter YhjE Neighboring gene AsmA family protein YhjG

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genetic interaction maps in Escherichia coli reveal functional crosstalk among cell envelope biogenesis pathways. Babu M, et al. PLoS Genet, 2011 Nov. PMID 22125496, Free PMC Article
    2. RpoS-regulated genes of Escherichia coli identified by random lacZ fusion mutagenesis. Vijayakumar SR, et al. J Bacteriol, 2004 Dec. PMID 15576800, Free PMC Article
    3. Adaptation to famine: a family of stationary-phase genes revealed by microarray analysis. Tani TH, et al. Proc Natl Acad Sci U S A, 2002 Oct 15. PMID 12374860, Free PMC Article
    4. Combined, functional genomic-biochemical approach to intermediary metabolism: interaction of acivicin, a glutamine amidotransferase inhibitor, with Escherichia coli K-12. Smulski DR, et al. J Bacteriol, 2001 Jun. PMID 11344143, Free PMC Article
    5. Genome-wide analysis of the general stress response network in Escherichia coli: sigmaS-dependent genes, promoters, and sigma factor selectivity. Weber H, et al. J Bacteriol, 2005 Mar. PMID 15716429, Free PMC Article

    See all (16) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Process Evidence Code Pubs
    acts_upstream_of_or_within lipopolysaccharide transport EXP
    Inferred from Experiment
    more info
    		 PubMed 
    involved_in lipopolysaccharide transport IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    acts_upstream_of_or_within lipopolysaccharide transport IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    is_active_in plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in plasma membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in plasma membrane ISM
    Inferred from Sequence Model
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    putative transporter YhjD

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      3673362..3674375
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_417979.1 putative transporter YhjD [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_417979.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A8S7E8Z7
      Conserved Domains (1) summary
      TIGR00766
      Location:52 → 326
      TIGR00766; inner membrane protein YhjD
    Nucleotide Protein
    Heading Accession and Version

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