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    ymfR IPR020297 domain-containing protein YmfR [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 945700, updated on 3-Dec-2024

    Summary

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    Official Symbol
    ymfR
    Official Full Name
    IPR020297 domain-containing protein YmfR
    Primary source
    ECOCYC:G6594
    Locus tag
    b1150
    See related
    ASAP:ABE-0003868
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK1136
    Summary
    YmfR is a conserved 60 aa phage protein of unknown function that is located between terminase and portal genes of e14, a position and length that is analagous to the 68 aa lambda W head-tail joining protein (NCBI: [More information is available at EcoGene: EG14336].
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    Genomic context

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    Sequence:
    NC_000913.3 (1205549..1205731)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene uncharacterized protein YmfL Neighboring gene cell division inhibitor YmfM Neighboring gene pseudo Neighboring gene chimeric replication protein/phage terminase YmfN Neighboring gene pseudo Neighboring gene protein BeeE Neighboring gene pseudo Neighboring gene DUF2313 domain-containing protein YmfQ Neighboring gene protein StfP

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Analysis of the lambdoid prophage element e14 in the E. coli K-12 genome. Mehta P, et al. BMC Microbiol, 2004 Jan 20. PMID 14733619, Free PMC Article
    2. The solution structure of bacteriophage lambda protein W, a small morphogenetic protein possessing a novel fold. Maxwell KL, et al. J Mol Biol, 2001 Apr 20. PMID 11302702
    3. Prophages and bacterial genomics: what have we learned so far? Casjens S. Mol Microbiol, 2003 Jul. PMID 12886937
    4. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article
    5. The complete genome sequence of Escherichia coli K-12. Blattner FR, et al. Science, 1997 Sep 5. PMID 9278503

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by EcoCyc

    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    IPR020297 domain-containing protein YmfR

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      1205549..1205731
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_415668.1 IPR020297 domain-containing protein YmfR [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_415668.1

      Status: PROVISIONAL

    Nucleotide Protein
    Heading Accession and Version

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