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    ycgV putative autotransporter adhesin YcgV [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 945767, updated on 3-Dec-2024

    Summary

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    Official Symbol
    ycgV
    Official Full Name
    putative autotransporter adhesin YcgV
    Primary source
    ECOCYC:G6629
    Locus tag
    b1202
    See related
    ASAP:ABE-0004035
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK1190
    Summary
    YcgV is a potential adhesin. [More information is available at EcoCyc: G6629].
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    Genomic context

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    Sequence:
    NC_000913.3 (1253085..1255952, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene dihydroxyacetone kinase subunit K Neighboring gene DNA-binding transcriptional dual regulator DhaR Neighboring gene redox-responsive ATPase YchF Neighboring gene peptidyl-tRNA hydrolase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Combined inactivation and expression strategy to study gene function under physiological conditions: application to identification of new Escherichia coli adhesins. Roux A, et al. J Bacteriol, 2005 Feb. PMID 15659678, Free PMC Article
    2. The beta-barrel finder (BBF) program, allowing identification of outer membrane beta-barrel proteins encoded within prokaryotic genomes. Zhai Y, et al. Protein Sci, 2002 Sep. PMID 12192075, Free PMC Article
    3. BOMP: a program to predict integral beta-barrel outer membrane proteins encoded within genomes of Gram-negative bacteria. Berven FS, et al. Nucleic Acids Res, 2004 Jul 1. PMID 15215418, Free PMC Article
    4. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article
    5. The complete genome sequence of Escherichia coli K-12. Blattner FR, et al. Science, 1997 Sep 5. PMID 9278503

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Process Evidence Code Pubs
    involved_in cell adhesion IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within cell adhesion involved in biofilm formation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in outer membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in outer membrane RCA
    inferred from Reviewed Computational Analysis
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    putative autotransporter adhesin YcgV

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      1253085..1255952 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_415720.1 putative autotransporter adhesin YcgV [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_415720.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A8S7RCV5
      Conserved Domains (3) summary
      PRK15313
      Location:53 → 614
      PRK15313; intestinal colonization autotransporter adhesin MisL
      cd01343
      Location:377 → 620
      PL1_Passenger_AT; Pertactin-like passenger domains (virulence factors), C-terminal, subgroup 1, of autotransporter proteins of the type V secretion system of Gram-negative bacteria. This subgroup includes the passenger domains of Neisseria and Haemophilus IgA1 proteases, ...
      TIGR01414
      Location:512 → 955
      autotrans_barl; outer membrane autotransporter barrel domain
    Nucleotide Protein
    Heading Accession and Version

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