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    cdgI putative c-di-GMP binding protein CdgI [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 946366, updated on 3-Dec-2024

    Summary

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    Official Symbol
    cdgI
    Official Full Name
    putative c-di-GMP binding protein CdgI
    Primary source
    ECOCYC:G6971
    Locus tag
    b1785
    See related
    ASAP:ABE-0005941
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK1783; yeaI
    Summary
    YeaI has a C-terminal putative diguanylate cyclase GGDEF domain. [More information is available at EcoGene: EG13495]. YeaI is an inner membrane protein with eight predicted transmembrane domains. [More information is available at EcoCyc: G6971].
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    Genomic context

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    Sequence:
    NC_000913.3 (1870385..1871860)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene protein kinase YeaG Neighboring gene DUF444 domain-containing protein YeaH Neighboring gene diguanylate cyclase DgcJ Neighboring gene mischarged aminoacyl-tRNA deacylase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. GGDEF proteins YeaI, YedQ, and YfiN reduce early biofilm formation and swimming motility in Escherichia coli. Sanchez-Torres V, et al. Appl Microbiol Biotechnol, 2011 Apr. PMID 21181144, Free PMC Article
    2. Cyclic-di-GMP-mediated signalling within the sigma network of Escherichia coli. Weber H, et al. Mol Microbiol, 2006 Nov. PMID 17010156
    3. C-di-GMP: the dawning of a novel bacterial signalling system. Römling U, et al. Mol Microbiol, 2005 Aug. PMID 16045609
    4. Gene expression patterns and differential input into curli fimbriae regulation of all GGDEF/EAL domain proteins in Escherichia coli. Sommerfeldt N, et al. Microbiology (Reading), 2009 Apr. PMID 19332833
    5. Characterization of the rdar morphotype, a multicellular behaviour in Enterobacteriaceae. Römling U. Cell Mol Life Sci, 2005 Jun. PMID 15818467, Free PMC Article

    See all (16) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. YeaI, YedQ, and YfiN are active diguanylate cyclases that reduce motility, eDNA, and early biofilm formation.
      Title: GGDEF proteins YeaI, YedQ, and YfiN reduce early biofilm formation and swimming motility in Escherichia coli.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables GTP binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables diguanylate cyclase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables diguanylate cyclase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables transferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in cell adhesion involved in single-species biofilm formation IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in negative regulation of bacterial-type flagellum-dependent cell motility IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    acts_upstream_of_or_within negative regulation of bacterial-type flagellum-dependent cell motility IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    is_active_in plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in plasma membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    putative c-di-GMP binding protein CdgI

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      1870385..1871860
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_416299.1 putative c-di-GMP binding protein CdgI [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_416299.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A7H9NEA1
      Conserved Domains (2) summary
      pfam00990
      Location:328 → 485
      GGDEF; Diguanylate cyclase, GGDEF domain
      cl29069
      Location:89 → 319
      MASE4; Membrane-associated sensor, integral membrane domain
    Nucleotide Protein
    Heading Accession and Version

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