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    yodB putative cytochrome b561 YodB [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 946491, updated on 3-Dec-2024

    Summary

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    Official Symbol
    yodB
    Official Full Name
    putative cytochrome b561 YodB
    Primary source
    ECOCYC:G7062
    Locus tag
    b1974
    See related
    ASAP:ABE-0006552
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK1970
    Summary
    YodB is a cytoplasmic membrane protein with four predicted transmembrane helices. [More information is available at EcoCyc: G7062].
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    Genomic context

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    Sequence:
    NC_000913.3 (2042368..2042898)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene membrane-bound flavocytochrome MsrQ Neighboring gene metal-binding protein ZinT Neighboring gene tRNA-Ser Neighboring gene Mlc titration factor

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Experimentally constrained topology models for 51,208 bacterial inner membrane proteins. Granseth E, et al. J Mol Biol, 2005 Sep 23. PMID 16120447
    2. Global topology analysis of the Escherichia coli inner membrane proteome. Daley DO, et al. Science, 2005 May 27. PMID 15919996
    3. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article
    4. The complete genome sequence of Escherichia coli K-12. Blattner FR, et al. Science, 1997 Sep 5. PMID 9278503
    5. Escherichia coli K-12: a cooperatively developed annotation snapshot--2005. Riley M, et al. Nucleic Acids Res, 2006. PMID 16397293, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables electron transfer activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables heme binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in respiratory electron transport chain IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    is_active_in plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in plasma membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    putative cytochrome b561 YodB

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      2042368..2042898
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_416483.4 putative cytochrome b561 YodB [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_416483.4

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A6M9WUL1, A0A8S7JU09, A0A8T6PYT9
      Conserved Domains (1) summary
      COG3038
      Location:1 → 176
      CybB; Cytochrome b561 [Energy production and conversion]
    Nucleotide Protein
    Heading Accession and Version

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