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    ypjA adhesin-like autotransporter YpjA [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 948630, updated on 3-Dec-2024

    Summary

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    Official Symbol
    ypjA
    Official Full Name
    adhesin-like autotransporter YpjA
    Primary source
    ECOCYC:G7382
    Locus tag
    b2647
    See related
    ASAP:ABE-0008713
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK2644
    Summary
    Mutants have reduced OM vesiculation (McBroom, 2006). [More information is available at EcoGene: EG13213]. YpjA was identified as a protein with similarity to antigen 43 (Ag43), a self-recognizing surface adhesin. [More information is available at EcoCyc: G7382].
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    Genomic context

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    Sequence:
    NC_000913.3 (2778146..2782726, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene toxin of the YpjF-YfjZ toxin-antitoxin system Neighboring gene pseudo Neighboring gene pseudo Neighboring gene DUF5508 domain-containing protein YpjB

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Combined inactivation and expression strategy to study gene function under physiological conditions: application to identification of new Escherichia coli adhesins. Roux A, et al. J Bacteriol, 2005 Feb. PMID 15659678, Free PMC Article
    2. Outer membrane vesicle production by Escherichia coli is independent of membrane instability. McBroom AJ, et al. J Bacteriol, 2006 Aug. PMID 16855227, Free PMC Article
    3. BOMP: a program to predict integral beta-barrel outer membrane proteins encoded within genomes of Gram-negative bacteria. Berven FS, et al. Nucleic Acids Res, 2004 Jul 1. PMID 15215418, Free PMC Article
    4. A functional update of the Escherichia coli K-12 genome. Serres MH, et al. Genome Biol, 2001. PMID 11574054, Free PMC Article
    5. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Process Evidence Code Pubs
    involved_in cell adhesion IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cell outer membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in outer membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    adhesin-like autotransporter YpjA

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      2778146..2782726 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_417134.2 adhesin-like autotransporter YpjA [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_417134.2

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A376WV32
      Conserved Domains (4) summary
      cd01343
      Location:931 → 1182
      PL1_Passenger_AT; Pertactin-like passenger domains (virulence factors), C-terminal, subgroup 1, of autotransporter proteins of the type V secretion system of Gram-negative bacteria. This subgroup includes the passenger domains of Neisseria and Haemophilus IgA1 proteases, ...
      TIGR01414
      Location:1079 → 1526
      autotrans_barl; outer membrane autotransporter barrel domain
      NF033176
      Location:61 → 801
      auto_AIDA-I; autotransporter adhesin AIDA-I
      pfam16168
      Location:892 → 946
      AIDA; Adhesin of bacterial autotransporter system, probable stalk
    Nucleotide Protein
    Heading Accession and Version

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