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    fdoI formate dehydrogenase O subunit gamma [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 948383, updated on 3-Dec-2024

    Summary

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    Official Symbol
    fdoI
    Official Full Name
    formate dehydrogenase O subunit gamma
    Primary source
    ECOCYC:EG11856
    Locus tag
    b3892
    See related
    ASAP:ABE-0012705
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK3885
    Summary
    Also known as FDH-Z. [More information is available at EcoGene: EG11856]. By similarity to the paralogous subunit of formate dehydrogenase-N, FdnI, FdoI is the heme-containing membrane subunit of formate dehydrogenase-O. [More information is available at EcoCyc: EG11856].
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    Genomic context

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    Sequence:
    NC_000913.3 (4081225..4081860, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene putative DNA-binding transcriptional regulator YiiE Neighboring gene protein YiiF Neighboring gene formate dehydrogenase formation protein Neighboring gene formate dehydrogenase O subunit beta Neighboring gene formate dehydrogenase O subunit alpha Neighboring gene sulfurtransferase for molybdenum cofactor sulfuration

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Expression and operon structure of the sel genes of Escherichia coli and identification of a third selenium-containing formate dehydrogenase isoenzyme. Sawers G, et al. J Bacteriol, 1991 Aug. PMID 1650339, Free PMC Article
    2. The hydrogenases and formate dehydrogenases of Escherichia coli. Sawers G. Antonie Van Leeuwenhoek, 1994. PMID 7747941
    3. Topological analysis of the aerobic membrane-bound formate dehydrogenase of Escherichia coli. Benoit S, et al. J Bacteriol, 1998 Dec. PMID 9852007, Free PMC Article
    4. A second phenazine methosulphate-linked formate dehydrogenase isoenzyme in Escherichia coli. Pommier J, et al. Biochim Biophys Acta, 1992 Jun 30. PMID 1504073
    5. Expression and characterization of the Escherichia coli fdo locus and a possible physiological role for aerobic formate dehydrogenase. Abaibou H, et al. J Bacteriol, 1995 Dec. PMID 8522521, Free PMC Article

    See all (13) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables electron transfer activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables formate dehydrogenase (NAD+) activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables formate dehydrogenase (quinone) activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within DNA damage response IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    involved_in anaerobic electron transport chain NAS
    Non-traceable Author Statement
    more info
    		 PubMed 
    acts_upstream_of_or_within anaerobic respiration EXP
    Inferred from Experiment
    more info
    		 PubMed 
    involved_in anaerobic respiration IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in cellular respiration IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within cellular respiration IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    involved_in formate oxidation IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    acts_upstream_of_or_within formate oxidation IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in formate oxidation NAS
    Non-traceable Author Statement
    more info
    		 PubMed 
    involved_in heme oxidation NAS
    Non-traceable Author Statement
    more info
    		 PubMed 
    involved_in respiratory electron transport chain IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    part_of formate dehydrogenase complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    part_of formate dehydrogenase complex IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    part_of formate dehydrogenase complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    part_of formate dehydrogenase complex ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in membrane ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    is_active_in plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in plasma membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in plasma membrane ISM
    Inferred from Sequence Model
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    formate dehydrogenase O subunit gamma
    NP_418328.1

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      4081225..4081860 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_418328.1 formate dehydrogenase O subunit gamma [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_418328.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A1V2GK36
      Conserved Domains (1) summary
      PRK10639
      Location:1 → 211
      PRK10639; formate dehydrogenase cytochrome b556 subunit
    Nucleotide Protein
    Heading Accession and Version

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