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    lgoR putative DNA-binding transcriptional regulator LgoR [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 948881, updated on 3-Dec-2024

    Summary

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    Official Symbol
    lgoR
    Official Full Name
    putative DNA-binding transcriptional regulator LgoR
    Primary source
    ECOCYC:G7944
    Locus tag
    b4357
    See related
    ASAP:ABE-0014287
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK4347; yjjM
    Summary
    Evidence for regulatory role is indirect: mutants fail to grow on D-galactonate and YjjM is homologous to GntR. [More information is available at EcoGene: EG12589]. YjjM is a predicted transcriptional regulator that is essential for growth on L-galactonate as the sole carbon source . [More information is available at EcoCyc: G7944].
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    Genomic context

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    Sequence:
    NC_000913.3 (4594937..4595851, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene methyl-accepting chemotaxis protein Tsr Neighboring gene galactonate:H(+) symporter Neighboring gene L-galactonate oxidoreductase Neighboring gene phosphoglycerol transferase I

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The pathway for L-galactonate catabolism in Escherichia coli K-12. Cooper RA. FEBS Lett, 1979 Jul 15. PMID 381020
    2. Systems approach to refining genome annotation. Reed JL, et al. Proc Natl Acad Sci U S A, 2006 Nov 14. PMID 17088549, Free PMC Article
    3. Proteome analysis of Escherichia coli using high-performance liquid chromatography and Fourier transform ion cyclotron resonance mass spectrometry. Ihling C, et al. Proteomics, 2005 May. PMID 15852340
    4. Phylogenetic distribution of DNA-binding transcription factors in bacteria and archaea. Pérez-Rueda E, et al. Comput Biol Chem, 2004 Dec. PMID 15556475
    5. Analysis of the Escherichia coli genome VI: DNA sequence of the region from 92.8 through 100 minutes. Burland V, et al. Nucleic Acids Res, 1995 Jun 25. PMID 7610040, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within galactonate catabolic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within regulation of DNA-templated transcription ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    putative DNA-binding transcriptional regulator LgoR

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      4594937..4595851 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. YP_026290.1 putative DNA-binding transcriptional regulator LgoR [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for YP_026290.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A793GL67, A0A895NVF4, A0A8S7R363
      Conserved Domains (2) summary
      COG1802
      Location:80 → 304
      GntR; DNA-binding transcriptional regulator, GntR family [Transcription]
      cl21459
      Location:7 → 59
      HTH; Helix-turn-helix domains
    Nucleotide Protein
    Heading Accession and Version

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