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    rclC DUF417 domain-containing inner membrane protein RclC [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 944974, updated on 17-Dec-2024

    Summary

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    Official Symbol
    rclC
    Official Full Name
    DUF417 domain-containing inner membrane protein RclC
    Primary source
    ECOCYC:G6171
    Locus tag
    b0301
    See related
    ASAP:ABE-0001038
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK0301; ykgB
    Summary
    Membrane topology predictions using experimentally determined C terminus locations indicate that YkgB has 3 transmembrane helices and the C-terminus is located in the cytoplasm . [More information is available at EcoCyc: G6171].
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    Genomic context

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    Sequence:
    NC_000913.3 (317726..318319, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene IS3 element protein InsF Neighboring gene pseudo Neighboring gene pseudo Neighboring gene DUF1471 domain-containing protein RclB Neighboring gene cupric reductase RclA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The RclR protein is a reactive chlorine-specific transcription factor in Escherichia coli. Parker BW, et al. J Biol Chem, 2013 Nov 8. PMID 24078635, Free PMC Article
    2. Cell-free complements in vivo expression of the E. coli membrane proteome. Savage DF, et al. Protein Sci, 2007 May. PMID 17456747, Free PMC Article
    3. Experimentally based topology models for E. coli inner membrane proteins. Rapp M, et al. Protein Sci, 2004 Apr. PMID 15044727, Free PMC Article
    4. Experimentally constrained topology models for 51,208 bacterial inner membrane proteins. Granseth E, et al. J Mol Biol, 2005 Sep 23. PMID 16120447
    5. Global topology analysis of the Escherichia coli inner membrane proteome. Daley DO, et al. Science, 2005 May 27. PMID 15919996

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Process Evidence Code Pubs
    involved_in response to hypochlorite IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    acts_upstream_of_or_within response to hypochlorite IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_or_within response to hypochlorite IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    is_active_in plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in plasma membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    DUF417 domain-containing inner membrane protein RclC

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      317726..318319 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_414835.2 DUF417 domain-containing inner membrane protein RclC [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_414835.2

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A1X3JKZ3
      Conserved Domains (1) summary
      COG3059
      Location:1 → 186
      YkgB; Uncharacterized membrane protein YkgB [Function unknown]
    Nucleotide Protein
    Heading Accession and Version

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