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    sdhD succinate:quinone oxidoreductase, membrane protein SdhD [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 945322, updated on 3-Dec-2024

    Summary

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    Official Symbol
    sdhD
    Official Full Name
    succinate:quinone oxidoreductase, membrane protein SdhD
    Primary source
    ECOCYC:EG10934
    Locus tag
    b0722
    See related
    ASAP:ABE-0002464
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    cybS; dhsD; ECK0711
    Summary
    The sdhABCD operon is negatively regulated by ryhB RNA as part of indirect positive regulation by Fur. [More information is available at EcoGene: EG10934]. One of two membrane proteins in the four subunit enzyme. [More information is available at EcoCyc: EG10934].
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    Genomic context

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    Sequence:
    NC_000913.3 (755560..755907)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene citrate synthase Neighboring gene protein YbgV Neighboring gene protein YbgU Neighboring gene succinate:quinone oxidoreductase, membrane protein SdhC Neighboring gene succinate:quinone oxidoreductase, FAD binding protein Neighboring gene succinate:quinone oxidoreductase, iron-sulfur cluster binding protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arc and Sfr functions of the Escherichia coli K-12 arcA gene product are genetically and physiologically separable. Silverman PM, et al. J Bacteriol, 1991 Sep. PMID 1885542, Free PMC Article
    2. Identification of genes negatively regulated by Fis: Fis and RpoS comodulate growth-phase-dependent gene expression in Escherichia coli. Xu J, et al. J Bacteriol, 1995 Feb. PMID 7860604, Free PMC Article
    3. Regulation of succinate dehydrogenase (sdhCDAB) operon expression in Escherichia coli in response to carbon supply and anaerobiosis: role of ArcA and Fnr. Park SJ, et al. Mol Microbiol, 1995 Feb. PMID 7783618
    4. Using rational screening and electron microscopy to optimize the crystallization of succinate:ubiquinone oxidoreductase from Escherichia coli. Horsefield R, et al. Acta Crystallogr D Biol Crystallogr, 2003 Mar. PMID 12595738
    5. Purification, crystallisation and preliminary crystallographic studies of succinate:ubiquinone oxidoreductase from Escherichia coli. Törnroth S, et al. Biochim Biophys Acta, 2002 Jan 17. PMID 11803025

    See all (69) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables electron transfer activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables electron transfer activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables heme binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables heme binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables heme binding IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in aerobic electron transport chain NAS
    Non-traceable Author Statement
    more info
    		 PubMed 
    involved_in aerobic respiration IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    acts_upstream_of_or_within aerobic respiration IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    involved_in cytochrome complex assembly IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    acts_upstream_of_or_within cytochrome complex assembly IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in tricarboxylic acid cycle IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in membrane NAS
    Non-traceable Author Statement
    more info
    		 PubMed 
    is_active_in plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in plasma membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    succinate:quinone oxidoreductase, membrane protein SdhD
    NP_415250.1

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      755560..755907
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_415250.1 succinate:quinone oxidoreductase, membrane protein SdhD [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_415250.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A2H4TNS9, A0A5B9AKP2
      Conserved Domains (1) summary
      PRK09488
      Location:1 → 115
      sdhD; succinate dehydrogenase membrane anchor subunit
    Nucleotide Protein
    Heading Accession and Version

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