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    ybhP endonuclease/exonuclease/phosphatase domain-containing protein YbhP [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 945408, updated on 17-Dec-2024

    Summary

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    Official Symbol
    ybhP
    Official Full Name
    endonuclease/exonuclease/phosphatase domain-containing protein YbhP
    Primary source
    ECOCYC:G6407
    Locus tag
    b0790
    See related
    ASAP:ABE-0002696
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK0779
    Summary
    It has been predicted through computational analysis of coevolutionary networks that YbhP may have a functional relationship with FliR, an integral membrane component of the flagellar export apparatus . ybhP is up-regulated by RpoS in the presence of putrescine , down-regulated by LuxS at OD 2.4 in LB , and induced by acivicin treatment . [More information is available at EcoCyc: G6407].
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    Genomic context

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    Sequence:
    NC_000913.3 (823736..824497, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene Bax1-I family protein YbhM Neighboring gene PF03706 family inner membrane protein YbhN Neighboring gene cardiolipin synthase B Neighboring gene inner membrane protein YbhQ Neighboring gene ABC exporter membrane subunit YbhR Neighboring gene ABC exporter membrane subunit YbhS Neighboring gene ABC exporter ATP binding subunit YbhF

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. High-confidence prediction of global interactomes based on genome-wide coevolutionary networks. Juan D, et al. Proc Natl Acad Sci U S A, 2008 Jan 22. PMID 18199838, Free PMC Article
    2. Enhancement of the synthesis of RpoN, Cra, and H-NS by polyamines at the level of translation in Escherichia coli cultured with glucose and glutamate. Terui Y, et al. J Bacteriol, 2007 Mar. PMID 17220219, Free PMC Article
    3. Combined, functional genomic-biochemical approach to intermediary metabolism: interaction of acivicin, a glutamine amidotransferase inhibitor, with Escherichia coli K-12. Smulski DR, et al. J Bacteriol, 2001 Jun. PMID 11344143, Free PMC Article
    4. luxS-dependent gene regulation in Escherichia coli K-12 revealed by genomic expression profiling. Wang L, et al. J Bacteriol, 2005 Dec. PMID 16321939, Free PMC Article
    5. Systematic Localization of Escherichia coli Membrane Proteins. Sueki A, et al. mSystems, 2020 Mar 3. PMID 32127419, Free PMC Article

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables catalytic activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in plasma membrane HDA PubMed 

    General protein information

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    Preferred Names
    endonuclease/exonuclease/phosphatase domain-containing protein YbhP

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      823736..824497 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_415311.1 endonuclease/exonuclease/phosphatase domain-containing protein YbhP [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_415311.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A8T5ZDM9
      Conserved Domains (1) summary
      COG3568
      Location:1 → 253
      ElsH; Metal-dependent hydrolase, endonuclease/exonuclease/phosphatase family [General function prediction only]
    Nucleotide Protein
    Heading Accession and Version

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