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    ydgJ putative oxidoreductase YdgJ [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 947164, updated on 3-Dec-2024

    Summary

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    Official Symbol
    ydgJ
    Official Full Name
    putative oxidoreductase YdgJ
    Primary source
    ECOCYC:G6868
    Locus tag
    b1624
    See related
    ASAP:ABE-0005437
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK1619
    Summary
    Based on sequence similarity, YdgJ is predicted to be a D-galactose 1-dehydrogenase . [More information is available at EcoCyc: G6868].
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    Genomic context

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    Sequence:
    NC_000913.3 (1703268..1704308, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene negative regulator of MalT activity/cystathionine beta-lyase Neighboring gene adenosine deaminase Neighboring gene beta-lactam resistance protein Neighboring gene H-NS- and StpA-binding protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. An expanded genome-scale model of Escherichia coli K-12 (iJR904 GSM/GPR). Reed JL, et al. Genome Biol, 2003. PMID 12952533, Free PMC Article
    2. Interaction network containing conserved and essential protein complexes in Escherichia coli. Butland G, et al. Nature, 2005 Feb 3. PMID 15690043
    3. A functional update of the Escherichia coli K-12 genome. Serres MH, et al. Genome Biol, 2001. PMID 11574054, Free PMC Article
    4. The binary protein-protein interaction landscape of Escherichia coli. Rajagopala SV, et al. Nat Biotechnol, 2014 Mar. PMID 24561554, Free PMC Article
    5. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables nucleotide binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables oxidoreductase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables scyllo-inositol dehydrogenase (NADP+) activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in antibiotic biosynthetic process IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cytosol IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    putative oxidoreductase YdgJ

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      1703268..1704308 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_416141.4 putative oxidoreductase YdgJ [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_416141.4

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A8S7T0H7
      Conserved Domains (1) summary
      PRK11579
      Location:1 → 346
      PRK11579; putative oxidoreductase; Provisional
    Nucleotide Protein
    Heading Accession and Version

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