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    yobA copper-binding protein [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 948315, updated on 3-Dec-2024

    Summary

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    Official Symbol
    yobA
    Official Full Name
    copper-binding protein
    Primary source
    ECOCYC:G7014
    Locus tag
    b1841
    See related
    ASAP:ABE-0006123
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK1842
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    Genomic context

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    Sequence:
    NC_000913.3 (1924595..1924969, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene DUF2511 domain-containing protein YebY Neighboring gene CopD family protein Neighboring gene DNA polymerase III subunit theta Neighboring gene putative carbon-nitrogen hydrolase family protein YobB

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The copper-linked Escherichia coli AZY operon: Structure, metal binding, and a possible physiological role in copper delivery. Hadley RC, et al. J Biol Chem, 2022 Jan. PMID 34822841, Free PMC Article
    2. Climbing the protein ladder. Dovichi NJ. Nat Biotechnol, 2004 Oct. PMID 15470461
    3. Protein sequencing by mass analysis of polypeptide ladders after controlled protein hydrolysis. Zhong H, et al. Nat Biotechnol, 2004 Oct. PMID 15361881
    4. Comparison of the large-scale periplasmic proteomes of the Escherichia coli K-12 and B strains. Han MJ, et al. J Biosci Bioeng, 2014 Apr. PMID 24140104
    5. Enrichment of low abundance proteins of Escherichia coli by hydroxyapatite chromatography. Fountoulakis M, et al. Electrophoresis, 1999 Aug. PMID 10493123

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables copper ion binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables copper ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in copper ion homeostasis IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in copper ion transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in response to copper ion IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in outer membrane-bounded periplasmic space IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in periplasmic space IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    copper-binding protein

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      1924595..1924969 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_416355.1 copper-binding protein [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_416355.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A376K492
      Conserved Domains (1) summary
      PRK10301
      Location:1 → 124
      PRK10301; CopC domain-containing protein YobA
    Nucleotide Protein
    Heading Accession and Version

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