U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    yecD isochorismatase family protein YecD [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 946384, updated on 3-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    yecD
    Official Full Name
    isochorismatase family protein YecD
    Primary source
    ECOCYC:EG12378
    Locus tag
    b1867
    See related
    ASAP:ABE-0006231
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK1868
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Sequence:
    NC_000913.3 (1950832..1951398)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene dihydroneopterin triphosphate diphosphatase Neighboring gene aspartate--tRNA ligase Neighboring gene DUF72 domain-containing protein YecE Neighboring gene MAPEG family inner membrane protein YecN Neighboring gene carboxy-S-adenosyl-L-methionine synthase Neighboring gene tRNA U34 carboxymethyltransferase

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Aspartyl-tRNA synthetase from Escherichia coli: cloning and characterisation of the gene, homologies of its translated amino acid sequence with asparaginyl- and lysyl-tRNA synthetases. Eriani G, et al. Nucleic Acids Res, 1990 Dec 11. PMID 2129559, Free PMC Article
    2. Intrinsic and extrinsic approaches for detecting genes in a bacterial genome. Borodovsky M, et al. Nucleic Acids Res, 1994 Nov 11. PMID 7984428, Free PMC Article
    3. A 460-kb DNA sequence of the Escherichia coli K-12 genome corresponding to the 40.1-50.0 min region on the linkage map. Itoh T, et al. DNA Res, 1996 Dec 31. PMID 9097040
    4. Protein abundance profiling of the Escherichia coli cytosol. Ishihama Y, et al. BMC Genomics, 2008 Feb 27. PMID 18304323, Free PMC Article
    5. A functional update of the Escherichia coli K-12 genome. Serres MH, et al. Genome Biol, 2001. PMID 11574054, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables hydrolase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytosol IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    isochorismatase family protein YecD

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      1950832..1951398
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_416381.2 isochorismatase family protein YecD [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_416381.2

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A5B9B1P7
      Conserved Domains (1) summary
      PRK11440
      Location:1 → 188
      PRK11440; putative hydrolase; Provisional
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.