U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    yejK nucleoid-associated protein YejK [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 946690, updated on 3-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    yejK
    Official Full Name
    nucleoid-associated protein YejK
    Primary source
    ECOCYC:EG12048
    Locus tag
    b2186
    See related
    ASAP:ABE-0007234
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK2180; ndpA
    Summary
    YejK is associated with chromosomal DNA isolated as "spermidine nucleoids" . [More information is available at EcoCyc: EG12048].
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Sequence:
    NC_000913.3 (2282940..2283947, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene putative DNA repair helicase RadD Neighboring gene 50S ribosomal subunit protein L25 Neighboring gene DUF1414 domain-containing protein YejL Neighboring gene lipopolysaccharide signal transducer LapC

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Structure of the E. coli nucleoid-associated protein YejK reveals a novel DNA binding clamp. Schumacher MA, et al. Nucleic Acids Res, 2024 Jul 8. PMID 38832628, Free PMC Article
    2. Characterization of the nucleoid-associated protein YejK. Lee C, et al. J Biol Chem, 2013 Nov 1. PMID 24043617, Free PMC Article
    3. Identification of two new proteins in spermidine nucleoids isolated from Escherichia coli. Murphy LD, et al. J Bacteriol, 1999 Jun. PMID 10368163, Free PMC Article
    4. Large-scale identification of protein-protein interaction of Escherichia coli K-12. Arifuzzaman M, et al. Genome Res, 2006 May. PMID 16606699, Free PMC Article
    5. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Structure of the E. coli nucleoid-associated protein YejK reveals a novel DNA binding clamp.
      Title: Structure of the E. coli nucleoid-associated protein YejK reveals a novel DNA binding clamp.
    2. N-terminus verified by Edman degradation on mature peptide
      Title: Identification of two new proteins in spermidine nucleoids isolated from Escherichia coli.
    Submit: New GeneRIF Correction

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables double-stranded DNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables double-stranded DNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables identical protein binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables single-stranded RNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables single-stranded RNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    is_active_in bacterial nucleoid IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in bacterial nucleoid IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nucleoid IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    nucleoid-associated protein YejK

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      2282940..2283947 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_416691.1 nucleoid-associated protein YejK [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_416691.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A2X1K2U5, A0A895NS13
      Conserved Domains (1) summary
      PRK00378
      Location:1 → 334
      PRK00378; nucleoid-associated protein NdpA; Validated
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.