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    abpA anti-bacteriophage protein [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 947110, updated on 3-Dec-2024

    Summary

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    Official Symbol
    abpA
    Official Full Name
    anti-bacteriophage protein
    Primary source
    ECOCYC:G7363
    Locus tag
    b2628
    See related
    ASAP:ABE-0008650
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK2624; yfjL
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    Genomic context

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    Sequence:
    NC_000913.3 (2763537..2765153, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene DUF3987 domain-containing protein YfjI Neighboring gene protein YfjJ Neighboring gene putative helicase YfjK Neighboring gene protein YfjM Neighboring gene RNase LS, toxin of the RnlAB toxin-antitoxin system Neighboring gene antitoxin RnlB

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. AbpA and AbpB provide anti-phage activity in Escherichia coli. Yasui R, et al. Genes Genet Syst, 2014. PMID 25224971
    2. Prophages and bacterial genomics: what have we learned so far? Casjens S. Mol Microbiol, 2003 Jul. PMID 12886937
    3. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article
    4. The complete genome sequence of Escherichia coli K-12. Blattner FR, et al. Science, 1997 Sep 5. PMID 9278503
    5. Escherichia coli K-12: a cooperatively developed annotation snapshot--2005. Riley M, et al. Nucleic Acids Res, 2006. PMID 16397293, Free PMC Article

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. AbpA and AbpB target DNA replication of phages to block phage propagation
      Title: AbpA and AbpB provide anti-phage activity in Escherichia coli.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables nuclease activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in defense response to virus IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within defense response to virus IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    anti-bacteriophage protein

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      2763537..2765153 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_417117.1 anti-bacteriophage protein [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_417117.1

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      P52127
      Conserved Domains (2) summary
      pfam08878
      Location:294 → 519
      DUF1837; Domain of unknown function (DUF1837)
      pfam14130
      Location:4 → 215
      DUF4297; Domain of unknown function (DUF4297)
    Nucleotide Protein
    Heading Accession and Version

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