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    syd SecY-interacting protein [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 947271, updated on 3-Dec-2024

    Summary

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    Official Symbol
    syd
    Official Full Name
    SecY-interacting protein
    Primary source
    ECOCYC:G7451
    Locus tag
    b2793
    See related
    ASAP:ABE-0009154
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK2788; ydr
    Summary
    Syd interacts with SecY, a membrane-embedded subunit of protein translocase . [More information is available at EcoCyc: G7451].
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    Genomic context

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    Sequence:
    NC_000913.3 (2924735..2925280, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene tRNA pseudouridine(65) synthase Neighboring gene DUF446 domain-containing protein YqcC Neighboring gene ncRNA Neighboring gene 7-cyano-7-deazaguanine reductase Neighboring gene nucleotide 5'-monophosphate nucleosidase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Structure, binding, and activity of Syd, a SecY-interacting protein. Dalal K, et al. J Biol Chem, 2009 Mar 20. PMID 19139097, Free PMC Article
    2. Syd, a SecY-interacting protein, excludes SecA from the SecYE complex with an altered SecY24 subunit. Matsuo E, et al. J Biol Chem, 1998 Jul 24. PMID 9668058
    3. Genetic analysis of an essential cytoplasmic domain of Escherichia coli SecY based on resistance to Syd, a SecY-interacting protein. Matsuo E, et al. Mol Gen Genet, 1998 May. PMID 9645430
    4. Product of a new gene, syd, functionally interacts with SecY when overproduced in Escherichia coli. Shimoike T, et al. J Biol Chem, 1995 Mar 10. PMID 7890670
    5. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. N-terminus verified by Edman degradation on complete protein
      Title: Product of a new gene, syd, functionally interacts with SecY when overproduced in Escherichia coli.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within regulation of protein-containing complex assembly IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    colocalizes_with cytoplasmic side of plasma membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in cytoplasmic side of plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    SecY-interacting protein

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      2924735..2925280 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_417273.1 SecY-interacting protein [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_417273.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A5B9AQD8, A0AAN3TS08
      Conserved Domains (1) summary
      PRK04968
      Location:5 → 181
      PRK04968; SecY interacting protein Syd; Provisional
    Nucleotide Protein
    Heading Accession and Version

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