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    fau putative 5-formyltetrahydrofolate cyclo-ligase [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 945167, updated on 3-Dec-2024

    Summary

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    Official Symbol
    fau
    Official Full Name
    putative 5-formyltetrahydrofolate cyclo-ligase
    Primary source
    ECOCYC:EG11158
    Locus tag
    b2912
    See related
    ASAP:ABE-0009559
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK2907; ygfA
    Summary
    Induced during biofilm formation. [More information is available at EcoGene: EG11158]. ygfA is important for survival under competitive planktonic growth conditions and for formation of dormant persister cells . [More information is available at EcoCyc: EG11158].
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    Genomic context

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    Sequence:
    NC_000913.3 (3056241..3056789)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene cell division protein ZapA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene toxic peptide IbsC Neighboring gene phosphoglycerate dehydrogenase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Regulation of 6S RNA biogenesis by switching utilization of both sigma factors and endoribonucleases. Kim KS, et al. Nucleic Acids Res, 2004. PMID 15550566, Free PMC Article
    2. Role of global regulators and nucleotide metabolism in antibiotic tolerance in Escherichia coli. Hansen S, et al. Antimicrob Agents Chemother, 2008 Aug. PMID 18519731, Free PMC Article
    3. Escherichia coli 6S RNA gene is part of a dual-function transcription unit. Hsu LM, et al. J Bacteriol, 1985 Mar. PMID 2579060, Free PMC Article
    4. Global analysis of candidate genes important for fitness in a competitive biofilm using DNA-array-based transposon mapping. Junker LM, et al. Microbiology (Reading), 2006 Aug. PMID 16849790
    5. Interaction network containing conserved and essential protein complexes in Escherichia coli. Butland G, et al. Nature, 2005 Feb 3. PMID 15690043

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General protein information

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    Preferred Names
    putative 5-formyltetrahydrofolate cyclo-ligase
    NP_417387.3

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      3056241..3056789
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_417387.3 putative 5-formyltetrahydrofolate cyclo-ligase [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_417387.3

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A0H3EKW3, E2QDP9
      Conserved Domains (1) summary
      PRK10333
      Location:1 → 182
      PRK10333; 5-formyltetrahydrofolate cyclo-ligase family protein; Provisional
    Nucleotide Protein
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