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    yhaJ DNA-binding transcriptional activator YhaJ [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 947621, updated on 3-Dec-2024

    Summary

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    Official Symbol
    yhaJ
    Official Full Name
    DNA-binding transcriptional activator YhaJ
    Primary source
    ECOCYC:G7619
    Locus tag
    b3105
    See related
    ASAP:ABE-0010213
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK3096
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    Genomic context

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    Sequence:
    NC_000913.3 (3253318..3254214, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene putative inner membrane protein Neighboring gene putative inner membrane protein Neighboring gene bicupin-related protein Neighboring gene uncharacterized protein YhaL

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The crystal structure of the protein YhaK from Escherichia coli reveals a new subclass of redox sensitive enterobacterial bicupins. Gurmu D, et al. Proteins, 2009 Jan. PMID 18561187
    2. The Highly Conserved Escherichia coli Transcription Factor YhaJ Regulates Aromatic Compound Degradation. Palevsky N, et al. Front Microbiol, 2016. PMID 27713734, Free PMC Article
    3. The repertoire of DNA-binding transcriptional regulators in Escherichia coli K-12. Pérez-Rueda E, et al. Nucleic Acids Res, 2000 Apr 15. PMID 10734204, Free PMC Article
    4. Phylogenetic distribution of DNA-binding transcription factors in bacteria and archaea. Pérez-Rueda E, et al. Comput Biol Chem, 2004 Dec. PMID 15556475
    5. The binary protein-protein interaction landscape of Escherichia coli. Rajagopala SV, et al. Nat Biotechnol, 2014 Mar. PMID 24561554, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables DNA-binding transcription activator activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables transcription cis-regulatory region binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within positive regulation of DNA-templated transcription initiation IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in regulation of DNA-templated transcription IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    DNA-binding transcriptional activator YhaJ

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      3253318..3254214 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_417576.1 DNA-binding transcriptional activator YhaJ [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_417576.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A6M9WYE3, A0A793N6F3
      Conserved Domains (2) summary
      pfam00126
      Location:9 → 68
      HTH_1; Bacterial regulatory helix-turn-helix protein, lysR family
      cl21456
      Location:99 → 291
      Periplasmic_Binding_Protein_Type_2; Type 2 periplasmic binding fold superfamily
    Nucleotide Protein
    Heading Accession and Version

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