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    yhcG DUF1016 domain-containing protein YhcG [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 947739, updated on 3-Dec-2024

    Summary

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    Official Symbol
    yhcG
    Official Full Name
    DUF1016 domain-containing protein YhcG
    Primary source
    ECOCYC:G7674
    Locus tag
    b3220
    See related
    ASAP:ABE-0010567
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK3209
    Summary
    YhcG is a member of the PD-(D/E)XK superfamily with highly diverged nuclease domains . [More information is available at EcoCyc: G7674].
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    Genomic context

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    Sequence:
    NC_000913.3 (3367827..3368954)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene IS5 family transposase and trans-activator Neighboring gene DUF1120 domain-containing protein YhcF Neighboring gene N-acetylneuraminate anomerase Neighboring gene N-acetylmannosamine kinase Neighboring gene putative N-acetylmannosamine-6-phosphate 2-epimerase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A functional update of the Escherichia coli K-12 genome. Serres MH, et al. Genome Biol, 2001. PMID 11574054, Free PMC Article
    2. The PD-(D/E)XK superfamily revisited: identification of new members among proteins involved in DNA metabolism and functional predictions for domains of (hitherto) unknown function. Kosinski J, et al. BMC Bioinformatics, 2005 Jul 12. PMID 16011798, Free PMC Article
    3. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article
    4. The complete genome sequence of Escherichia coli K-12. Blattner FR, et al. Science, 1997 Sep 5. PMID 9278503
    5. Escherichia coli K-12: a cooperatively developed annotation snapshot--2005. Riley M, et al. Nucleic Acids Res, 2006. PMID 16397293, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables nuclease activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    DUF1016 domain-containing protein YhcG

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      3367827..3368954
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_417687.1 DUF1016 domain-containing protein YhcG [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_417687.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A8S7EEZ2
      Conserved Domains (2) summary
      COG4804
      Location:142 → 299
      YhcG; Predicted nuclease of restriction endonuclease-like (RecB) superfamily, DUF1016 family [General function prediction only]
      pfam17761
      Location:19 → 184
      DUF1016_N; DUF1016 N-terminal domain
    Nucleotide Protein
    Heading Accession and Version

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