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    ydcS putative ABC transporter periplasmic binding protein/polyhydroxybutyrate synthase [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 946005, updated on 3-Dec-2024

    Summary

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    Official Symbol
    ydcS
    Official Full Name
    putative ABC transporter periplasmic binding protein/polyhydroxybutyrate synthase
    Primary source
    ECOCYC:G6751
    Locus tag
    b1440
    See related
    ASAP:ABE-0004803
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK1434
    Summary
    YdcS was purified and characterized as a PHB synthase, however most PHB remains so there must be another synthase(s) (Dai, 2008). [More information is available at EcoGene: EG13762]. YdcS is a periplasmic binding protein of a predicted spermidine/putrescine ABC transporter. [More information is available at EcoCyc: G6751].
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    Genomic context

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    Sequence:
    NC_000913.3 (1511654..1512799)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene antitoxin of the HicA-HicB toxin-antitoxin system/ DNA-binding transcriptional repressor HicB Neighboring gene fused putative DNA-binding transcriptional regulator/putative aminotransferase YdcR Neighboring gene putative ABC transporter ATP-binding protein YdcT Neighboring gene putative ABC transporter membrane subunit YdcU Neighboring gene putative ABC transporter membrane subunit YdcV

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Biological complexes of poly-beta-hydroxybutyrate. Reusch RN. FEMS Microbiol Rev, 1992 Dec. PMID 1476771
    2. Proof for a nonproteinaceous calcium-selective channel in Escherichia coli by total synthesis from (R)-3-hydroxybutanoic acid and inorganic polyphosphate. Das S, et al. Proc Natl Acad Sci U S A, 1997 Aug 19. PMID 9256437, Free PMC Article
    3. Poly(3-hydroxybutyrate) is associated with specific proteins in the cytoplasm and membranes of Escherichia coli. Huang R, et al. J Biol Chem, 1996 Sep 6. PMID 8703033
    4. Gating kinetics of E. coli poly-3-hydroxybutyrate/polyphosphate channels in planar bilayer membranes. Das S, et al. J Membr Biol, 1999 Jul 15. PMID 10430657
    5. Polyphosphate/poly-(R)-3-hydroxybutyrate) ion channels in cell membranes. Reusch RN. Prog Mol Subcell Biol, 1999. PMID 10448676

    See all (34) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. dsDNA transfers across the two membranes through different routes in natural and artificial transformation of E. coli.
      Title: Two different routes for double-stranded DNA transfer in natural and artificial transformation of Escherichia coli.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables acyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables polyamine binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within DNA import into cell involved in transformation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within poly-hydroxybutyrate biosynthetic process IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in poly-hydroxybutyrate biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within poly-hydroxybutyrate biosynthetic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in polyamine transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in transmembrane transport NAS
    Non-traceable Author Statement
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing NAS
    Non-traceable Author Statement
    more info
    		 PubMed 
    located_in membrane NAS
    Non-traceable Author Statement
    more info
    		 PubMed 
    located_in outer membrane-bounded periplasmic space IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in outer membrane-bounded periplasmic space IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in periplasmic space IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    putative ABC transporter periplasmic binding protein/polyhydroxybutyrate synthase

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      1511654..1512799
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_415957.1 putative ABC transporter periplasmic binding protein/polyhydroxybutyrate synthase [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_415957.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0AAN3LKC4
      Conserved Domains (1) summary
      cd13588
      Location:36 → 330
      PBP2_polyamine_1; The periplasmic-binding component of an uncharacterized ABC transporter involved in uptake of polyamines; contains the type 2 periplasmic binding fold
    Nucleotide Protein
    Heading Accession and Version

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