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    fdnI formate dehydrogenase N subunit gamma [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 946038, updated on 17-Dec-2024

    Summary

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    Official Symbol
    fdnI
    Official Full Name
    formate dehydrogenase N subunit gamma
    Primary source
    ECOCYC:EG11229
    Locus tag
    b1476
    See related
    ASAP:ABE-0004921
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK1470
    Summary
    FdnI, the membrane subunit of formate dehydrogenase-N, contains two heme b556 groups and a site for menaquinone reduction. [More information is available at EcoCyc: EG11229].
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    Genomic context

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    Sequence:
    NC_000913.3 (1551338..1551991)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene amino acid exporter YddG Neighboring gene formate dehydrogenase N subunit alpha Neighboring gene formate dehydrogenase N subunit beta Neighboring gene DNA-binding transcriptional regulator YddM Neighboring gene ethanol dehydrogenase/alcohol dehydrogenase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Formate dehydrogenase from Escherichia coli. Enoch HG, et al. Methods Enzymol, 1982. PMID 6755185
    2. Anaerobic transport in Escherichia coli membrane vesicles. Boonstra J, et al. J Biol Chem, 1975 Sep 10. PMID 1099094
    3. Localization of upstream sequence elements required for nitrate and anaerobic induction of fdn (formate dehydrogenase-N) operon expression in Escherichia coli K-12. Li J, et al. J Bacteriol, 1992 Aug. PMID 1629153, Free PMC Article
    4. Purification and crystallization of the respiratory complex formate dehydrogenase-N from Escherichia coli. Jormakka M, et al. Acta Crystallogr D Biol Crystallogr, 2002 Jan. PMID 11752799
    5. Nitrate-inducible formate dehydrogenase in Escherichia coli K-12. II. Evidence that a mRNA stem-loop structure is essential for decoding opal (UGA) as selenocysteine. Berg BL, et al. J Biol Chem, 1991 Nov 25. PMID 1834670

    See all (21) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables electron transfer activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables electron transfer activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables formate dehydrogenase (NAD+) activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables formate dehydrogenase (quinone) activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables formate dehydrogenase (quinone) activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables heme binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protein binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in anaerobic electron transport chain NAS
    Non-traceable Author Statement
    more info
    		 PubMed 
    involved_in anaerobic respiration IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    acts_upstream_of_or_within anaerobic respiration IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    involved_in cellular respiration IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in formate oxidation IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    acts_upstream_of_or_within formate oxidation IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in formate oxidation NAS
    Non-traceable Author Statement
    more info
    		 PubMed 
    involved_in heme oxidation NAS
    Non-traceable Author Statement
    more info
    		 PubMed 
    involved_in respiratory electron transport chain IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    part_of formate dehydrogenase complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    part_of formate dehydrogenase complex IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    part_of formate dehydrogenase complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    part_of formate dehydrogenase complex IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    located_in membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    is_active_in plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in plasma membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    formate dehydrogenase N subunit gamma
    NP_415993.1

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      1551338..1551991
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_415993.1 formate dehydrogenase N subunit gamma [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_415993.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A1X3J1U5, A0A1X3JHJ5, A0A7I6H6K5, A0AAJ3U182, A7ZLR8
      Conserved Domains (1) summary
      PRK10179
      Location:1 → 217
      PRK10179; formate dehydrogenase-N subunit gamma; Provisional
    Nucleotide Protein
    Heading Accession and Version

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