U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    yedK genome maintenance protein [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 946435, updated on 17-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    yedK
    Official Full Name
    genome maintenance protein
    Primary source
    ECOCYC:EG11662
    Locus tag
    b1931
    See related
    ASAP:ABE-0006428
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK1930; yedG
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Sequence:
    NC_000913.3 (2009821..2010489)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene lipoprotein YedD Neighboring gene putative selenium transporter YedE Neighboring gene putative sulfurtransferase YedF Neighboring gene putative acetyltransferase YedL Neighboring gene pseudo

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Molecular basis of abasic site sensing in single-stranded DNA by the SRAP domain of E. coli yedK. Wang N, et al. Nucleic Acids Res, 2019 Nov 4. PMID 31504793, Free PMC Article
    2. Protection of abasic sites during DNA replication by a stable thiazolidine protein-DNA cross-link. Thompson PS, et al. Nat Struct Mol Biol, 2019 Jul. PMID 31235915, Free PMC Article
    3. HMCES Maintains Genome Integrity by Shielding Abasic Sites in Single-Strand DNA. Mohni KN, et al. Cell, 2019 Jan 10. PMID 30554877, Free PMC Article
    4. Organization of the Escherichia coli and Salmonella typhimurium chromosomes between flagellar regions IIIa and IIIb, including a large non-coding region. Raha M, et al. J Gen Microbiol, 1993 Jul. PMID 8371104
    5. A functional update of the Escherichia coli K-12 genome. Serres MH, et al. Genome Biol, 2001. PMID 11574054, Free PMC Article

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Structural biology of DNA abasic site protection by SRAP proteins.
      Title: Structural biology of DNA abasic site protection by SRAP proteins.
    2. we present multiple crystal structures captured in the apo-, nonspecific-substrate-binding, specific-substrate-binding, and product-binding states of yedK
      Title: Molecular basis of abasic site sensing in single-stranded DNA by the SRAP domain of E. coli yedK.
    Submit: New GeneRIF Correction

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables lyase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables peptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protein-DNA covalent cross-linking activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables single-stranded DNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables single-stranded DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in DNA damage response IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in SOS response IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in protein-DNA covalent cross-linking repair IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in proteolysis IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    genome maintenance protein

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      2009821..2010489
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. YP_025310.1 genome maintenance protein [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for YP_025310.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A376M6K9
      Conserved Domains (1) summary
      PRK09951
      Location:1 → 222
      PRK09951; hypothetical protein; Provisional
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.