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    yfeD putative DNA-binding transcriptional regulator YfeD [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 946865, updated on 17-Dec-2024

    Summary

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    Official Symbol
    yfeD
    Official Full Name
    putative DNA-binding transcriptional regulator YfeD
    Primary source
    ECOCYC:EG11432
    Locus tag
    b2399
    See related
    ASAP:ABE-0007909
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK2393
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    Genomic context

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    Sequence:
    NC_000913.3 (2518813..2519205)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene tRNA-Ala Neighboring gene DNA-binding transcriptional dual regulator YfeC Neighboring gene glutamate--tRNA ligase Neighboring gene tRNA-Val

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. RASTA-Bacteria: a web-based tool for identifying toxin-antitoxin loci in prokaryotes. Sevin EW, et al. Genome Biol, 2007. PMID 17678530, Free PMC Article
    2. Precise mapping and comparison of two evolutionarily related regions of the Escherichia coli K-12 chromosome. Evolution of valU and lysT from an ancestral tRNA operon. Brun YV, et al. J Mol Biol, 1990 Aug 20. PMID 2201776
    3. Three new RelE-homologous mRNA interferases of Escherichia coli differentially induced by environmental stresses. Christensen-Dalsgaard M, et al. Mol Microbiol, 2010 Jan. PMID 19943910, Free PMC Article
    4. The repertoire of DNA-binding transcriptional regulators in Escherichia coli K-12. Pérez-Rueda E, et al. Nucleic Acids Res, 2000 Apr 15. PMID 10734204, Free PMC Article
    5. Phylogenetic distribution of DNA-binding transcription factors in bacteria and archaea. Pérez-Rueda E, et al. Comput Biol Chem, 2004 Dec. PMID 15556475

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    putative DNA-binding transcriptional regulator YfeD

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      2518813..2519205
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_416898.3 putative DNA-binding transcriptional regulator YfeD [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_416898.3

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A377MVE2, A0A853E1Z4
      Conserved Domains (1) summary
      pfam07037
      Location:8 → 129
      DUF1323; Putative transcription regulator (DUF1323)
    Nucleotide Protein
    Heading Accession and Version

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