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    intA integrase IntA [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 946160, updated on 3-Dec-2024

    Summary

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    Official Symbol
    intA
    Official Full Name
    integrase IntA
    Primary source
    ECOCYC:EG11783
    Locus tag
    b2622
    See related
    ASAP:ABE-0008630
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK2618; intX; slpA
    Summary
    IntA (SlpA) is a prophage integrase. [More information is available at EcoCyc: EG11783].
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    Genomic context

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    Sequence:
    NC_000913.3 (2756159..2757400)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene SsrA-binding protein Neighboring gene ncRNA Neighboring gene uncharacterized protein YfjH Neighboring gene DNA-binding transcriptional activator AlpA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Excision of a P4-like cryptic prophage leads to Alp protease expression in Escherichia coli. Kirby JE, et al. J Bacteriol, 1994 Apr. PMID 7511583, Free PMC Article
    2. A tRNA-like structure is present in 10Sa RNA, a small stable RNA from Escherichia coli. Komine Y, et al. Proc Natl Acad Sci U S A, 1994 Sep 27. PMID 7524073, Free PMC Article
    3. Prophages and bacterial genomics: what have we learned so far? Casjens S. Mol Microbiol, 2003 Jul. PMID 12886937
    4. Global functional atlas of Escherichia coli encompassing previously uncharacterized proteins. Hu P, et al. PLoS Biol, 2009 Apr 28. PMID 19402753, Free PMC Article
    5. Interaction network containing conserved and essential protein complexes in Escherichia coli. Butland G, et al. Nature, 2005 Feb 3. PMID 15690043

    See all (11) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables prophage integrase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables prophage integrase activity IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in DNA integration IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in DNA recombination IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in establishment of integrated proviral latency IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in provirus excision IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    acts_upstream_of_or_within provirus excision IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in symbiont entry into host cell IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in viral genome integration into host DNA IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    integrase IntA

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      2756159..2757400
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_417111.1 integrase IntA [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_417111.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A376FXR4
      Conserved Domains (1) summary
      PRK09692
      Location:1 → 413
      PRK09692; integrase; Provisional
    Nucleotide Protein
    Heading Accession and Version

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