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    ppnN nucleotide 5'-monophosphate nucleosidase [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 947266, updated on 3-Dec-2024

    Summary

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    Official Symbol
    ppnN
    Official Full Name
    nucleotide 5'-monophosphate nucleosidase
    Primary source
    ECOCYC:EG12373
    Locus tag
    b2795
    See related
    ASAP:ABE-0009166
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK2790; ygdH
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    Genomic context

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    Sequence:
    NC_000913.3 (2926308..2927672)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene SecY-interacting protein Neighboring gene 7-cyano-7-deazaguanine reductase Neighboring gene L-serine:H(+) symporter SdaC Neighboring gene L-serine deaminase II

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Novel (p)ppGpp Binding and Metabolizing Proteins of Escherichia coli. Zhang Y, et al. mBio, 2018 Mar 6. PMID 29511080, Free PMC Article
    2. Nontargeted in vitro metabolomics for high-throughput identification of novel enzymes in Escherichia coli. Sévin DC, et al. Nat Methods, 2017 Feb. PMID 27941785
    3. (p)ppGpp Regulates a Bacterial Nucleosidase by an Allosteric Two-Domain Switch. Zhang YE, et al. Mol Cell, 2019 Jun 20. PMID 31023582
    4. Large-scale identification of protein-protein interaction of Escherichia coli K-12. Arifuzzaman M, et al. Genome Res, 2006 May. PMID 16606699, Free PMC Article
    5. Protein abundance profiling of the Escherichia coli cytosol. Ishihama Y, et al. BMC Genomics, 2008 Feb 27. PMID 18304323, Free PMC Article

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables AMP nucleosidase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables AMP nucleosidase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables guanosine tetraphosphate binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables hydrolase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables identical protein binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables inosinate nucleosidase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables inosinate nucleosidase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables pyrimidine-5'-nucleotide nucleosidase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables pyrimidine-5'-nucleotide nucleosidase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within protein homotetramerization IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    is_active_in cytosol IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in cytosol IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    part_of protein-containing complex IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    nucleotide 5'-monophosphate nucleosidase
    NP_417275.1

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      2926308..2927672
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_417275.1 nucleotide 5'-monophosphate nucleosidase [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_417275.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A0H2Z2D7
      Conserved Domains (3) summary
      COG1611
      Location:136 → 348
      YgdH; Predicted Rossmann fold nucleotide-binding protein [General function prediction only]
      pfam11892
      Location:333 → 453
      DUF3412; Domain of unknown function (DUF3412)
      pfam14793
      Location:3 → 111
      DUF4478; Domain of unknown function (DUF4478)
    Nucleotide Protein
    Heading Accession and Version

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