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    ygeV putative sigma(54)-dependent transcriptional regulator YgeV [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 947320, updated on 3-Dec-2024

    Summary

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    Official Symbol
    ygeV
    Official Full Name
    putative sigma(54)-dependent transcriptional regulator YgeV
    Primary source
    ECOCYC:G7488
    Locus tag
    b2869
    See related
    ASAP:ABE-0009420
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK2865
    Summary
    AFMB Structural Genomics target Number 60 (http://afmb.cnrs-mrs.fr/article171.html). [More information is available at EcoGene: EG13052]. Regulation has been described . [More information is available at EcoCyc: G7488].
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    Genomic context

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    Sequence:
    NC_000913.3 (3004008..3005786, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene putative xanthine dehydrogenase molybdenum-binding subunit XdhA Neighboring gene putative xanthine dehydrogenase FAD-binding subunit XdhB Neighboring gene putative xanthine dehydrogenase iron-sulfur-binding subunit XdhC Neighboring gene putative carbamoyltransferase YgeW Neighboring gene 2,3-diaminopropionate ammonia-lyase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. DNA microarray-based identification of genes controlled by autoinducer 2-stimulated quorum sensing in Escherichia coli. DeLisa MP, et al. J Bacteriol, 2001 Sep. PMID 11514505, Free PMC Article
    2. The repertoire of DNA-binding transcriptional regulators in Escherichia coli K-12. Pérez-Rueda E, et al. Nucleic Acids Res, 2000 Apr 15. PMID 10734204, Free PMC Article
    3. Purine catabolism in Escherichia coli and function of xanthine dehydrogenase in purine salvage. Xi H, et al. J Bacteriol, 2000 Oct. PMID 10986234, Free PMC Article
    4. Phylogenetic distribution of DNA-binding transcription factors in bacteria and archaea. Pérez-Rueda E, et al. Comput Biol Chem, 2004 Dec. PMID 15556475
    5. Global analysis of candidate genes important for fitness in a competitive biofilm using DNA-array-based transposon mapping. Junker LM, et al. Microbiology (Reading), 2006 Aug. PMID 16849790

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    General protein information

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    Preferred Names
    putative sigma(54)-dependent transcriptional regulator YgeV

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      3004008..3005786 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_417345.1 putative sigma(54)-dependent transcriptional regulator YgeV [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_417345.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A376FUH4
      Conserved Domains (1) summary
      COG3829
      Location:18 → 589
      RocR; Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding Fis domains [Transcription, Signal transduction mechanisms]
    Nucleotide Protein
    Heading Accession and Version

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