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    ygiV DNA-binding transcriptional repressor YgiV [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 945805, updated on 17-Dec-2024

    Summary

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    Official Symbol
    ygiV
    Official Full Name
    DNA-binding transcriptional repressor YgiV
    Primary source
    ECOCYC:G7573
    Locus tag
    b3023
    See related
    ASAP:ABE-0009928
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK3014
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    Genomic context

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    Sequence:
    NC_000913.3 (3168749..3169231, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene antitoxin of the MqsRA toxin-antitoxin system/DNA-binding transcriptional repressor MqsA Neighboring gene mRNA interferase toxin MqsR Neighboring gene BOF family protein YgiW Neighboring gene DNA-binding transcriptional activator QseB Neighboring gene sensor histidine kinase QseC

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genomic sequencing reveals regulatory mutations and recombinational events in the widely used MC4100 lineage of Escherichia coli K-12. Ferenci T, et al. J Bacteriol, 2009 Jun. PMID 19376874, Free PMC Article
    2. Escherichia coli transcription factor YncC (McbR) regulates colanic acid and biofilm formation by repressing expression of periplasmic protein YbiM (McbA). Zhang XS, et al. ISME J, 2008 Jun. PMID 18309357
    3. A functional update of the Escherichia coli K-12 genome. Serres MH, et al. Genome Biol, 2001. PMID 11574054, Free PMC Article
    4. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article
    5. The complete genome sequence of Escherichia coli K-12. Blattner FR, et al. Science, 1997 Sep 5. PMID 9278503

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Process Evidence Code Pubs
    acts_upstream_of_or_within negative regulation of DNA-templated transcription IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    DNA-binding transcriptional repressor YgiV

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      3168749..3169231 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. YP_026197.1 DNA-binding transcriptional repressor YgiV [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for YP_026197.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A376MIR3, A0A8S7CSJ8
      Conserved Domains (1) summary
      COG3449
      Location:6 → 160
      SbmC; DNA gyrase inhibitor GyrI [Replication, recombination and repair]
    Nucleotide Protein
    Heading Accession and Version

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