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    yhdE nucleoside triphosphate pyrophosphatase YhdE [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 947753, updated on 3-Dec-2024

    Summary

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    Official Symbol
    yhdE
    Official Full Name
    nucleoside triphosphate pyrophosphatase YhdE
    Primary source
    ECOCYC:EG11298
    Locus tag
    b3248
    See related
    ASAP:ABE-0010653
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK3236
    Summary
    Maf is a nucleotide-binding protein implicated in inhibition of septum formation in B. subtilis. [More information is available at EcoGene: EG11298].
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    Genomic context

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    Sequence:
    NC_000913.3 (3397785..3398378, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene metalloprotease subunit TldD Neighboring gene phospholipid transport factor YhdP Neighboring gene RNase G Neighboring gene cell shape determining protein MreD Neighboring gene cell shape determining protein MreC Neighboring gene dynamic cytoskeletal protein MreB

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Functional implications from crystal structures of the conserved Bacillus subtilis protein Maf with and without dUTP. Minasov G, et al. Proc Natl Acad Sci U S A, 2000 Jun 6. PMID 10841541, Free PMC Article
    2. Sequence of the downstream flanking region of the shape-determining genes mreBCD of Escherichia coli. Wachi M, et al. Gene, 1991 Sep 30. PMID 1937035
    3. A new method to investigate the catalytic mechanism of YhdE pyrophosphatase by using a pyrophosphate fluorescence probe. Shen Q, et al. Sci Rep, 2017 Aug 15. PMID 28811554, Free PMC Article
    4. Enrichment of low abundance proteins of Escherichia coli by hydroxyapatite chromatography. Fountoulakis M, et al. Electrophoresis, 1999 Aug. PMID 10493123
    5. From the genome sequence to the proteome and back: evaluation of E. coli genome annotation with a 2-D gel-based proteomics approach. Maillet I, et al. Proteomics, 2007 Apr. PMID 17366475

    See all (12) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables 8-oxo-(d)RTP hydrolase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables UTP diphosphatase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables UTP diphosphatase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables dTTP diphosphatase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables dTTP diphosphatase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables hydrolase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables identical protein binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables manganese ion binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables nucleoside triphosphate diphosphatase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables nucleoside triphosphate diphosphatase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables nucleoside triphosphate diphosphatase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protein homodimerization activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables pyrophosphatase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in nucleotide metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    nucleoside triphosphate pyrophosphatase YhdE

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      3397785..3398378 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_417714.1 nucleoside triphosphate pyrophosphatase YhdE [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_417714.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A2H4TUB4, A0A478LDG5
      Conserved Domains (1) summary
      PRK00032
      Location:1 → 190
      PRK00032; septum formation inhibitor Maf
    Nucleotide Protein
    Heading Accession and Version

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