U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    yjbR PF04237 family protein YjbR [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 948560, updated on 3-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    yjbR
    Official Full Name
    PF04237 family protein YjbR
    Primary source
    ECOCYC:EG11936
    Locus tag
    b4057
    See related
    ASAP:ABE-0013288
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK4049
    Summary
    YjbR double wings NMR structure resembles the phage T4 MotA DNA binding C-terminal domain (Singarapu, 2007). [More information is available at EcoGene: EG11936]. A solution structure of YjbR has been determined, and structural similarity to the "double wing" DNA binding motif was found . [More information is available at EcoCyc: EG11936].
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Sequence:
    NC_000913.3 (4270658..4271014)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene acid phosphatase/phosphotransferase Neighboring gene PF01894 family protein YjbQ Neighboring gene UvrABC excision nuclease subunit A Neighboring gene ssDNA-binding protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. The curli biosynthesis regulator CsgD co-ordinates the expression of both positive and negative determinants for biofilm formation in Escherichia coli. Brombacher E, et al. Microbiology (Reading), 2003 Oct. PMID 14523117
    2. Small genes/gene-products in Escherichia coli K-12. Wasinger VC, et al. FEMS Microbiol Lett, 1998 Dec 15. PMID 9868784
    3. Analysis of the Escherichia coli genome. IV. DNA sequence of the region from 89.2 to 92.8 minutes. Blattner FR, et al. Nucleic Acids Res, 1993 Nov 25. PMID 8265357, Free PMC Article
    4. Large-scale identification of protein-protein interaction of Escherichia coli K-12. Arifuzzaman M, et al. Genome Res, 2006 May. PMID 16606699, Free PMC Article
    5. NMR structure of protein yjbR from Escherichia coli reveals 'double-wing' DNA binding motif. Singarapu KK, et al. Proteins, 2007 May 1. PMID 17266124

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. N-terminus verified by Edman degradation on complete protein
      Title: Small genes/gene-products in Escherichia coli K-12.
    2. Molecular models for the protein structure are presented from 1h, 13C, and 15N nmr.
      Title: NMR structure of protein yjbR from Escherichia coli reveals 'double-wing' DNA binding motif.
    Submit: New GeneRIF Correction

    General gene information

    Go to the top of the page Help

    Homology

    General protein information

    Go to the top of the page Help
    Preferred Names
    PF04237 family protein YjbR

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      4270658..4271014
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_418481.1 PF04237 family protein YjbR [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_418481.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A2W6PAT3
      Conserved Domains (1) summary
      COG2315
      Location:1 → 117
      MmcQ; Predicted DNA-binding protein with double-wing structural motif, MmcQ/YjbR family [Transcription]
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.