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    idnD L-idonate 5-dehydrogenase [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 944769, updated on 3-Dec-2024

    Summary

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    Official Symbol
    idnD
    Official Full Name
    L-idonate 5-dehydrogenase
    Primary source
    ECOCYC:G7893
    Locus tag
    b4267
    See related
    ASAP:ABE-0013975
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK4260; yjgV
    Summary
    L-idonate 5-dehydrogenase catalyzes the reversible oxidation of L-idonate to 5-ketogluconate. [More information is available at EcoCyc: G7893].
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    Genomic context

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    Sequence:
    NC_000913.3 (4493375..4494406, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene L-idonate/5-ketogluconate/gluconate transporter Neighboring gene 5-keto-D-gluconate 5-reductase Neighboring gene D-gluconate kinase, thermosensitive Neighboring gene NADPH-dependent aldehyde reductase Ahr

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Transcriptional organization and regulation of the L-idonic acid pathway (GntII system) in Escherichia coli. Bausch C, et al. J Bacteriol, 2004 Mar. PMID 14973046, Free PMC Article
    2. Sequence analysis of the GntII (subsidiary) system for gluconate metabolism reveals a novel pathway for L-idonic acid catabolism in Escherichia coli. Bausch C, et al. J Bacteriol, 1998 Jul. PMID 9658018, Free PMC Article
    3. What's for dinner?: Entner-Doudoroff metabolism in Escherichia coli. Peekhaus N, et al. J Bacteriol, 1998 Jul. PMID 9657988, Free PMC Article
    4. Analysis of the Escherichia coli genome VI: DNA sequence of the region from 92.8 through 100 minutes. Burland V, et al. Nucleic Acids Res, 1995 Jun 25. PMID 7610040, Free PMC Article
    5. Interaction network containing conserved and essential protein complexes in Escherichia coli. Butland G, et al. Nature, 2005 Feb 3. PMID 15690043

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables L-idonate 5-dehydrogenase (NAD+) activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables L-idonate 5-dehydrogenase [NAD(P)+] activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables L-idonate 5-dehydrogenase [NAD(P)+] activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables oxidoreductase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in D-gluconate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in L-idonate catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within L-idonate catabolic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    L-idonate 5-dehydrogenase
    NP_418688.1

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      4493375..4494406 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_418688.1 L-idonate 5-dehydrogenase [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_418688.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A1V2GLP0
      Conserved Domains (1) summary
      PRK09880
      Location:1 → 343
      PRK09880; L-idonate 5-dehydrogenase; Provisional
    Nucleotide Protein
    Heading Accession and Version

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