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    ybhS ABC exporter membrane subunit YbhS [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 945411, updated on 3-Dec-2024

    Summary

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    Official Symbol
    ybhS
    Official Full Name
    ABC exporter membrane subunit YbhS
    Primary source
    ECOCYC:G6410
    Locus tag
    b0793
    See related
    ASAP:ABE-0002703
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK0782
    Summary
    The putative ybiHybhGFSR operon encodes the YbhG putative membrane fusion protein of efflux pumps. ybhS is paralogous to ybhR, yhhJ, and rbbA. [More information is available at EcoGene: EG13675]. YbhS is a membrane component of a predicted ATP-dependent efflux pump. [More information is available at EcoCyc: G6410].
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    Genomic context

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    Sequence:
    NC_000913.3 (826119..827252, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene cardiolipin synthase B Neighboring gene endonuclease/exonuclease/phosphatase domain-containing protein YbhP Neighboring gene inner membrane protein YbhQ Neighboring gene ABC exporter membrane subunit YbhR Neighboring gene ABC exporter ATP binding subunit YbhF Neighboring gene HlyD_D23 family protein YbhG Neighboring gene DNA-binding transcriptional dual regulator CecR

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A Putative Efflux Transporter of the ABC Family, YbhFSR, in Escherichia coli Functions in Tetracycline Efflux and Na(+)(Li(+))/H(+) Transport. Feng Z, et al. Front Microbiol, 2020. PMID 32390957, Free PMC Article
    2. The Escherichia coli ATP-binding cassette (ABC) proteins. Linton KJ, et al. Mol Microbiol, 1998 Apr. PMID 9593292
    3. Transcription factor CecR (YbiH) regulates a set of genes affecting the sensitivity of Escherichia coli against cefoperazone and chloramphenicol. Yamanaka Y, et al. Microbiology (Reading), 2016 Jul. PMID 27112147
    4. Getting in or out: early segregation between importers and exporters in the evolution of ATP-binding cassette (ABC) transporters. Saurin W, et al. J Mol Evol, 1999 Jan. PMID 9873074
    5. Experimentally constrained topology models for 51,208 bacterial inner membrane proteins. Granseth E, et al. J Mol Biol, 2005 Sep 23. PMID 16120447

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables ABC-type transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables efflux transmembrane transporter activity IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in lithium ion transmembrane transport NAS
    Non-traceable Author Statement
    more info
    		 PubMed 
    involved_in sodium ion transmembrane transport NAS
    Non-traceable Author Statement
    more info
    		 PubMed 
    involved_in tetracycline transmembrane transport NAS
    Non-traceable Author Statement
    more info
    		 PubMed 
    acts_upstream_of_or_within xenobiotic detoxification by transmembrane export across the plasma membrane IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    involved_in xenobiotic transmembrane transport NAS
    Non-traceable Author Statement
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing NAS
    Non-traceable Author Statement
    more info
    		 PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    is_active_in plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in plasma membrane ISM
    Inferred from Sequence Model
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ABC exporter membrane subunit YbhS
    NP_415314.1

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      826119..827252 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_415314.1 ABC exporter membrane subunit YbhS [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_415314.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A2X1J130
      Conserved Domains (1) summary
      NF033858
      Location:7 → 334
      ABC2_perm_RbbA; ribosome-associated ATPase/putative transporter RbbA
    Nucleotide Protein
    Heading Accession and Version

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