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    rutD putative aminoacrylate hydrolase RutD [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 946586, updated on 17-Dec-2024

    Summary

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    Official Symbol
    rutD
    Official Full Name
    putative aminoacrylate hydrolase RutD
    Primary source
    ECOCYC:G6520
    Locus tag
    b1009
    See related
    ASAP:ABE-0003410
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK1000; ycdJ
    Summary
    NtrC regulon. [More information is available at EcoGene: EG13856]. Escherichia coli K-12 contains a previously undescribed pathway for pyrimidine degradation. [More information is available at EcoCyc: G6520].
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    Genomic context

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    Sequence:
    NC_000913.3 (1070965..1071765, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene FMN reductase RutF Neighboring gene putative malonic semialdehyde reductase Neighboring gene 3-aminoacrylate deaminase Neighboring gene ureidoacrylate amidohydrolase Neighboring gene pyrimidine monooxygenase RutA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A multi-faceted analysis of RutD reveals a novel family of α/β hydrolases. Knapik AA, et al. Proteins, 2012 Oct. PMID 22641504, Free PMC Article
    2. Comparative genomics reveals novel biochemical pathways. Piskur J, et al. Trends Genet, 2007 Aug. PMID 17555842
    3. A hidden metabolic pathway exposed. Osterman A. Proc Natl Acad Sci U S A, 2006 Apr 11. PMID 16595627, Free PMC Article
    4. The Rut pathway for pyrimidine degradation: novel chemistry and toxicity problems. Kim KS, et al. J Bacteriol, 2010 Aug. PMID 20400551, Free PMC Article
    5. Nitrogen regulatory protein C-controlled genes of Escherichia coli: scavenging as a defense against nitrogen limitation. Zimmer DP, et al. Proc Natl Acad Sci U S A, 2000 Dec 19. PMID 11121068, Free PMC Article

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables hydrolase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables hydrolase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protein homodimerization activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in nitrogen utilization IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within nitrogen utilization IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in nitrogen utilization IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within pyrimidine nucleobase catabolic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in uracil catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within uracil catabolic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in uracil catabolic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    putative aminoacrylate hydrolase RutD

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      1070965..1071765 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_415529.1 putative aminoacrylate hydrolase RutD [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_415529.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A8S7TWF2
      Conserved Domains (1) summary
      TIGR03611
      Location:2 → 249
      RutD; pyrimidine utilization protein D
    Nucleotide Protein
    Heading Accession and Version

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