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    stfR putative prophage side tail fiber protein StfR [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 945207, updated on 17-Dec-2024

    Summary

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    Official Symbol
    stfR
    Official Full Name
    putative prophage side tail fiber protein StfR
    Primary source
    ECOCYC:G6695
    Locus tag
    b1372
    See related
    ASAP:ABE-0004595
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK1367; ynaB
    Summary
    stfR encodes a predicted tail fiber protein of the cryptic Rac prophage , and shows similarity to the e14 lambdoid prophage element . stfR encodes an interacting sequence tag which suggests StfR is a self-assembling protein . [More information is available at EcoCyc: G6695].
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    Genomic context

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    Sequence:
    NC_000913.3 (1429049..1432411)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene putative prophage tail length tape measure domain-containing protein YnaA Neighboring gene pseudo Neighboring gene IS5 family transposase and trans-activator Neighboring gene putative tail fiber assembly protein TfaR Neighboring gene putative site-specific recombinase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Identification and mapping of self-assembling protein domains encoded by the Escherichia coli K-12 genome by use of lambda repressor fusions. Mariño-Ramírez L, et al. J Bacteriol, 2004 Mar. PMID 14973045, Free PMC Article
    2. Genome-wide transcriptional response of chemostat-cultured Escherichia coli to zinc. Lee LJ, et al. J Bacteriol, 2005 Feb. PMID 15659689, Free PMC Article
    3. Analysis of the lambdoid prophage element e14 in the E. coli K-12 genome. Mehta P, et al. BMC Microbiol, 2004 Jan 20. PMID 14733619, Free PMC Article
    4. Temporal gene-expression in Escherichia coli K-12 biofilms. Domka J, et al. Environ Microbiol, 2007 Feb. PMID 17222132
    5. Systems based mapping demonstrates that recovery from alkylation damage requires DNA repair, RNA processing, and translation associated networks. Rooney JP, et al. Genomics, 2009 Jan. PMID 18824089, Free PMC Article

    See all (11) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables structural molecule activity IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    putative prophage side tail fiber protein StfR

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      1429049..1432411
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_415890.2 putative prophage side tail fiber protein StfR [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_415890.2

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A8S7XA51, A0AAN3Q1Z6
      Conserved Domains (5) summary
      PHA02584
      Location:708 → 908
      34; long tail fiber, proximal subunit; Provisional
      pfam08400
      Location:1 → 124
      phage_tail_N; Prophage tail fibre N-terminal
      pfam03406
      Location:462 → 499
      Phage_fiber_2; Phage tail fibre repeat
      pfam07484
      Location:907 → 954
      Collar; Phage Tail Collar Domain
      NF033849
      Location:998 → 1100
      ser_rich_anae_1; serine-rich protein
    Nucleotide Protein
    Heading Accession and Version

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