U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    ydeQ putative fimbrial adhesin protein YdeQ [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 946050, updated on 17-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    ydeQ
    Official Full Name
    putative fimbrial adhesin protein YdeQ
    Primary source
    ECOCYC:G6792
    Locus tag
    b1502
    See related
    ASAP:ABE-0005006
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK1495
    Summary
    First 24 aa are predicted to be a type I signal peptide. [More information is available at EcoGene: EG13799].
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Sequence:
    NC_000913.3 (1586820..1587734, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene two-component system connector SafA Neighboring gene putative oxidoreductase YdeP Neighboring gene putative fimbrial protein YdeR Neighboring gene putative fimbrial protein YdeS

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Temporal gene-expression in Escherichia coli K-12 biofilms. Domka J, et al. Environ Microbiol, 2007 Feb. PMID 17222132
    2. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article
    3. The complete genome sequence of Escherichia coli K-12. Blattner FR, et al. Science, 1997 Sep 5. PMID 9278503
    4. Escherichia coli K-12: a cooperatively developed annotation snapshot--2005. Riley M, et al. Nucleic Acids Res, 2006. PMID 16397293, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by EcoCyc

    Process Evidence Code Pubs
    involved_in cell adhesion IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in cell adhesion involved in single-species biofilm formation IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in pilus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in pilus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    putative fimbrial adhesin protein YdeQ

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      1586820..1587734 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_416019.1 putative fimbrial adhesin protein YdeQ [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_416019.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A8S7EH30
      Conserved Domains (2) summary
      pfam09160
      Location:30 → 171
      FimH_man-bind; FimH, mannose binding
      cl01416
      Location:193 → 304
      Fimbrial; Fimbrial protein
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.