U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    yfaZ putative porin YfaZ [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 946739, updated on 17-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    yfaZ
    Official Full Name
    putative porin YfaZ
    Primary source
    ECOCYC:G7163
    Locus tag
    b2250
    See related
    ASAP:ABE-0007445
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK2243
    Summary
    Predicted 21 aa signal peptide is consistent with an observed secB-dependent precursor cleavage that is blocked by azide (Marani, 2006). [More information is available at EcoGene: EG14088]. YfaZ localizes to the outer membrane in Escherichia coli . [More information is available at EcoCyc: G7163].
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Sequence:
    NC_000913.3 (2363733..2364275, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene putative DNA-binding transcriptional regulator YfaX Neighboring gene IPR008135 CinA family protein YfaY Neighboring gene pyrimidine deoxynucleotide diphosphatase NudI Neighboring gene putative lipopolysaccharide core heptose(II)-phosphate phosphatase

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Fishing new proteins in the twilight zone of genomes: the test case of outer membrane proteins in Escherichia coli K12, Escherichia coli O157:H7, and other Gram-negative bacteria. Casadio R, et al. Protein Sci, 2003 Jun. PMID 12761386, Free PMC Article
    2. BOMP: a program to predict integral beta-barrel outer membrane proteins encoded within genomes of Gram-negative bacteria. Berven FS, et al. Nucleic Acids Res, 2004 Jul 1. PMID 15215418, Free PMC Article
    3. New Escherichia coli outer membrane proteins identified through prediction and experimental verification. Marani P, et al. Protein Sci, 2006 Apr. PMID 16522795, Free PMC Article
    4. A functional update of the Escherichia coli K-12 genome. Serres MH, et al. Genome Biol, 2001. PMID 11574054, Free PMC Article
    5. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by EcoCyc

    Component Evidence Code Pubs
    located_in cell outer membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in cell outer membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    putative porin YfaZ

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      2363733..2364275 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_416753.4 putative porin YfaZ [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_416753.4

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A1V2GJK6
      Conserved Domains (1) summary
      pfam07437
      Location:1 → 180
      YfaZ; YfaZ precursor
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.