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    yfiM DUF2279 domain-containing protein YfiM [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 947060, updated on 17-Dec-2024

    Summary

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    Official Symbol
    yfiM
    Official Full Name
    DUF2279 domain-containing protein YfiM
    Primary source
    ECOCYC:EG12857
    Locus tag
    b2586
    See related
    ASAP:ABE-0008513
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK2584
    Summary
    First 14 aa are predicted to be a type II signal peptide. [More information is available at EcoGene: EG12857].
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    Genomic context

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    Sequence:
    NC_000913.3 (2724128..2724451)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene peptidyl-lysine N-acetyltransferase Neighboring gene protein PssL Neighboring gene phosphatidylserine synthase Neighboring gene alpha-ketoglutarate:H(+) symporter Neighboring gene protein YfiS Neighboring gene 5S ribosomal RNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new gene located between pss and rrnG on the Escherichia coli chromosome. Seol W, et al. J Bacteriol, 1990 Sep. PMID 2118499, Free PMC Article
    2. A comprehensive genetic characterization of bacterial motility. Girgis HS, et al. PLoS Genet, 2007 Sep. PMID 17941710, Free PMC Article
    3. Detection of new genes in a bacterial genome using Markov models for three gene classes. Borodovsky M, et al. Nucleic Acids Res, 1995 Sep 11. PMID 7567469, Free PMC Article
    4. Prediction of lipoprotein signal peptides in Gram-negative bacteria. Juncker AS, et al. Protein Sci, 2003 Aug. PMID 12876315, Free PMC Article
    5. Fine-tuning the prediction of sequences cleaved by signal peptidase II: a curated set of proven and predicted lipoproteins of Escherichia coli K-12. Gonnet P, et al. Proteomics, 2004 Jun. PMID 15174130

    See all (11) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    General protein information

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    Preferred Names
    DUF2279 domain-containing protein YfiM

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      2724128..2724451
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_417081.2 DUF2279 domain-containing protein YfiM [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_417081.2

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A779ZBC4
      Conserved Domains (1) summary
      PRK10759
      Location:1 → 106
      PRK10759; YfiM family lipoprotein
    Nucleotide Protein
    Heading Accession and Version

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