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    yggL putative ribosome assembly factor YggL [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 947449, updated on 3-Dec-2024

    Summary

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    Official Symbol
    yggL
    Official Full Name
    putative ribosome assembly factor YggL
    Primary source
    ECOCYC:EG12443
    Locus tag
    b2959
    See related
    ASAP:ABE-0009712
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK2954
    Summary
    Pfam PF04320 DUF469 family. [More information is available at EcoGene: EG12443].
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    Genomic context

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    Sequence:
    NC_000913.3 (3101807..3102133, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene L-asparaginase 2 Neighboring gene DUF2884 domain-containing protein YggN Neighboring gene tRNA m(7)G46 methyltransferase Neighboring gene adenine DNA glycosylase Neighboring gene putative Fe(2(+))-trafficking protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Nucleotide sequence of the Escherichia coli micA gene required for A/G-specific mismatch repair: identity of micA and mutY. Tsai-Wu JJ, et al. J Bacteriol, 1991 Mar. PMID 2001994, Free PMC Article
    2. Grad-seq shines light on unrecognized RNA and protein complexes in the model bacterium Escherichia coli. Hör J, et al. Nucleic Acids Res, 2020 Sep 18. PMID 32813020, Free PMC Article
    3. Systems based mapping demonstrates that recovery from alkylation damage requires DNA repair, RNA processing, and translation associated networks. Rooney JP, et al. Genomics, 2009 Jan. PMID 18824089, Free PMC Article
    4. Protein abundance profiling of the Escherichia coli cytosol. Ishihama Y, et al. BMC Genomics, 2008 Feb 27. PMID 18304323, Free PMC Article
    5. A functional update of the Escherichia coli K-12 genome. Serres MH, et al. Genome Biol, 2001. PMID 11574054, Free PMC Article

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Process Evidence Code Pubs
    acts_upstream_of_or_within ribosome assembly IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    is_active_in cytosol IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in cytosol IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    putative ribosome assembly factor YggL

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      3101807..3102133 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_417434.4 putative ribosome assembly factor YggL [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_417434.4

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A376FX01
      Conserved Domains (1) summary
      PRK11702
      Location:1 → 108
      PRK11702; hypothetical protein; Provisional
    Nucleotide Protein
    Heading Accession and Version

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