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    yihI Der GTPase-activating protein YihI [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 948363, updated on 17-Dec-2024

    Summary

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    Official Symbol
    yihI
    Official Full Name
    Der GTPase-activating protein YihI
    Primary source
    ECOCYC:EG11835
    Locus tag
    b3866
    See related
    ASAP:ABE-0012626
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK3859
    Summary
    yihI is negatively regulated by RpoS in stationary phase. [More information is available at EcoGene: EG11835].
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    Genomic context

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    Sequence:
    NC_000913.3 (4051347..4051856)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene GTP-binding protein YihA Neighboring gene ncRNA Neighboring gene coproporphyrinogen III dehydrogenase Neighboring gene uncharacterized protein YshB

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Significant enhanced expression and solubility of human proteins in Escherichia coli by fusion with protein S from Myxococcus xanthus. Kobayashi H, et al. Appl Environ Microbiol, 2009 Aug. PMID 19542330, Free PMC Article
    2. RpoS-dependent regulation of genes expressed at late stationary phase in Escherichia coli. Talukder AA, et al. FEBS Lett, 1996 May 20. PMID 8647276
    3. Analysis of the Escherichia coli genome. III. DNA sequence of the region from 87.2 to 89.2 minutes. Plunkett G 3rd, et al. Nucleic Acids Res, 1993 Jul 25. PMID 8346018, Free PMC Article
    4. A bacterial GAP-like protein, YihI, regulating the GTPase of Der, an essential GTP-binding protein in Escherichia coli. Hwang J, et al. J Mol Biol, 2010 Jun 25. PMID 20434458
    5. Interaction network containing conserved and essential protein complexes in Escherichia coli. Butland G, et al. Nature, 2005 Feb 3. PMID 15690043

    See all (11) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Der interacts with YihI, which activates the GTPase activity of Der.
      Title: A bacterial GAP-like protein, YihI, regulating the GTPase of Der, an essential GTP-binding protein in Escherichia coli.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables GTPase activator activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables GTPase activator activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within negative regulation of ribosome biogenesis IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in ribosome biogenesis IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytosol IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    Der GTPase-activating protein YihI

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      4051347..4051856
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_418302.1 Der GTPase-activating protein YihI [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_418302.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A8T6BV87
      Conserved Domains (1) summary
      COG3078
      Location:1 → 147
      YihI; Ribosome assembly protein YihI, activator of Der GTPase [Translation, ribosomal structure and biogenesis]
    Nucleotide Protein
    Heading Accession and Version

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