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    yjcS linear primary-alkylsulfatase [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 948597, updated on 3-Dec-2024

    Summary

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    Official Symbol
    yjcS
    Official Full Name
    linear primary-alkylsulfatase
    Primary source
    ECOCYC:EG11955
    Locus tag
    b4083
    See related
    ASAP:ABE-0013377
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK4076
    Summary
    Flagellar regulon. [More information is available at EcoGene: EG11955]. The promoter of yjcS is predicted to be 28-dependent and can be transcribed by |FRAME: [More information is available at EcoCyc: EG11955].
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    Genomic context

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    Sequence:
    NC_000913.3 (4304612..4306597, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene putative multidrug efflux pump subunit MdtO Neighboring gene putative multidrug efflux pump membrane fusion protein Neighboring gene putative lipoprotein YtcA Neighboring gene D-allose kinase Neighboring gene D-allulose-6-phosphate 3-epimerase Neighboring gene D-allose ABC transporter membrane subunit Neighboring gene D-allose ABC transporter ATP binding subunit

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Structural and functional analysis show that the Escherichia coli uncharacterized protein YjcS is likely an alkylsulfatase. Liang Y, et al. Protein Sci, 2014 Oct. PMID 25066955, Free PMC Article
    2. In silico prediction and functional validation of sigma28-regulated genes in Chlamydia and Escherichia coli. Yu HH, et al. J Bacteriol, 2006 Dec. PMID 16997971, Free PMC Article
    3. Analysis of the Escherichia coli genome. IV. DNA sequence of the region from 89.2 to 92.8 minutes. Blattner FR, et al. Nucleic Acids Res, 1993 Nov 25. PMID 8265357, Free PMC Article
    4. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article
    5. The complete genome sequence of Escherichia coli K-12. Blattner FR, et al. Science, 1997 Sep 5. PMID 9278503

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables hydrolase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables linear primary-alkylsulfatase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables linear primary-alkylsulfatase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables linear primary-alkylsulfatase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protein dimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in dodecyl sulfate metabolic process IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in dodecyl sulfate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within dodecyl sulfate metabolic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    is_active_in outer membrane-bounded periplasmic space IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in outer membrane-bounded periplasmic space IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in periplasmic space IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    linear primary-alkylsulfatase

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      4304612..4306597 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_418507.2 linear primary-alkylsulfatase [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_418507.2

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A8S7IN30
      Conserved Domains (1) summary
      COG2015
      Location:8 → 661
      BDS1; Alkyl sulfatase BDS1 and related hydrolases, metallo-beta-lactamase superfamily [Secondary metabolites biosynthesis, transport and catabolism]
    Nucleotide Protein
    Heading Accession and Version

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