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    ybdN putative PAPS reductase/DUF3440 domain-containing protein YbdN [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 945205, updated on 17-Dec-2024

    Summary

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    Official Symbol
    ybdN
    Official Full Name
    putative PAPS reductase/DUF3440 domain-containing protein YbdN
    Primary source
    ECOCYC:G6331
    Locus tag
    b0602
    See related
    ASAP:ABE-0002073
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK0596
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    Genomic context

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    Sequence:
    NC_000913.3 (635349..636569, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene hydroxycarboxylate dehydrogenase A Neighboring gene methionine transaminase Neighboring gene ParB-like nuclease domain-containing protein YbdM Neighboring gene putative LysR family DNA-binding transcriptional regulator YbdO Neighboring gene protein sulfenic acid reductase and chaperone DsbG

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A functional update of the Escherichia coli K-12 genome. Serres MH, et al. Genome Biol, 2001. PMID 11574054, Free PMC Article
    2. The binary protein-protein interaction landscape of Escherichia coli. Rajagopala SV, et al. Nat Biotechnol, 2014 Mar. PMID 24561554, Free PMC Article
    3. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article
    4. The complete genome sequence of Escherichia coli K-12. Blattner FR, et al. Science, 1997 Sep 5. PMID 9278503
    5. Escherichia coli K-12: a cooperatively developed annotation snapshot--2005. Riley M, et al. Nucleic Acids Res, 2006. PMID 16397293, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables catalytic activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in cellular response to oxygen levels IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    putative PAPS reductase/DUF3440 domain-containing protein YbdN

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      635349..636569 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_415135.1 putative PAPS reductase/DUF3440 domain-containing protein YbdN [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_415135.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A418GJA8
      Conserved Domains (1) summary
      COG3969
      Location:1 → 400
      YbdN; Predicted phosphoadenosine phosphosulfate sulfurtransferase, contains C-terminal DUF3440 domain [General function prediction only]
    Nucleotide Protein
    Heading Accession and Version

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