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    ybfD H repeat-associated putative transposase YbfD [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 945176, updated on 3-Dec-2024

    Summary

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    Official Symbol
    ybfD
    Official Full Name
    H repeat-associated putative transposase YbfD
    Primary source
    ECOCYC:EG11524
    Locus tag
    b0706
    See related
    ASAP:ABE-0002411
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK0695
    Summary
    YbfD is shorter than other paralogs, and has the 17 C-terminal residues, like the other paralogs, right after the stop codon, in another frame. [More information is available at EcoGene: EG11524].
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    Genomic context

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    Sequence:
    NC_000913.3 (738092..738853)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene inactive transposase YbfQ Neighboring gene pseudo Neighboring gene DUF1722 domain-containing protein YbgA Neighboring gene deoxyribodipyrimidine photolyase Neighboring gene dipeptide:H(+) symporter DtpD

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Evolutionary diversification of an ancient gene family (rhs) through C-terminal displacement. Jackson AP, et al. BMC Genomics, 2009 Dec 7. PMID 19968874, Free PMC Article
    2. Rhs elements of Escherichia coli K-12: complex composites of shared and unique components that have different evolutionary histories. Zhao S, et al. J Bacteriol, 1993 May. PMID 8387990, Free PMC Article
    3. A systematic investigation identifies a significant number of probable pseudogenes in the Escherichia coli genome. Homma K, et al. Gene, 2002 Jul 10. PMID 12234664
    4. Reshuffling of Rhs components to create a new element. Zhao S, et al. J Bacteriol, 1995 Mar. PMID 7868617, Free PMC Article
    5. A functional update of the Escherichia coli K-12 genome. Serres MH, et al. Genome Biol, 2001. PMID 11574054, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables transposase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in DNA transposition IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    H repeat-associated putative transposase YbfD

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      738092..738853
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_415234.1 H repeat-associated putative transposase YbfD [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_415234.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A377FCK9
      Conserved Domains (1) summary
      NF033564
      Location:29 → 250
      transpos_ISAs1; ISAs1 family transposase
    Nucleotide Protein
    Heading Accession and Version

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