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    xisR excisionase [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 947399, updated on 3-Dec-2024

    Summary

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    Official Symbol
    xisR
    Official Full Name
    excisionase
    Primary source
    ECOCYC:G6677
    Locus tag
    b1346
    See related
    ASAP:ABE-0004519
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK1343; ydaQ
    Summary
    YdaQ is a member of the DUF1233 family of putative exisionases. [More information is available at EcoGene: EG13359].
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    Genomic context

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    Sequence:
    NC_000913.3 (1413237..1413452, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene tRNA cytosine(32) 2-sulfurtransferase TtcA Neighboring gene putative integrase Neighboring gene double-strand break reduction protein Neighboring gene ncRNA Neighboring gene endodeoxyribonuclease toxin RalR Neighboring gene recombinase RecT Neighboring gene exonuclease VIII, ds DNA exonuclease, 5' --> 3' specific

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Prophages and bacterial genomics: what have we learned so far? Casjens S. Mol Microbiol, 2003 Jul. PMID 12886937
    2. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article
    3. The complete genome sequence of Escherichia coli K-12. Blattner FR, et al. Science, 1997 Sep 5. PMID 9278503
    4. Escherichia coli K-12: a cooperatively developed annotation snapshot--2005. Riley M, et al. Nucleic Acids Res, 2006. PMID 16397293, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    excisionase

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      1413237..1413452 complement
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_415862.4 excisionase [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_415862.4

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A0H3JEN6, A0A979GEA9
      Conserved Domains (1) summary
      pfam06806
      Location:5 → 68
      DUF1233; Putative excisionase (DUF1233)
    Nucleotide Protein
    Heading Accession and Version

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