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    rlhA 23S rRNA 5-hydroxycytidine C2501 synthase [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 945993, updated on 3-Dec-2024

    Summary

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    Official Symbol
    rlhA
    Official Full Name
    23S rRNA 5-hydroxycytidine C2501 synthase
    Primary source
    ECOCYC:G6746
    Locus tag
    b1435
    See related
    ASAP:ABE-0004786
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK1429; ydcP
    Summary
    ydcP, yegQ, yhbU, and yhbV are paralogs. [More information is available at EcoGene: EG13759].
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    Genomic context

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    Sequence:
    NC_000913.3 (1506781..1508742)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene putative transport protein YdcO Neighboring gene DNA-binding transcriptional dual regulator SutR Neighboring gene DUF2554 domain-containing protein YncJ Neighboring gene mRNA interferase toxin HicA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A 570-kb DNA sequence of the Escherichia coli K-12 genome corresponding to the 28.0-40.1 min region on the linkage map. Aiba H, et al. DNA Res, 1996 Dec 31. PMID 9097039
    2. MEROPS: the peptidase database. Rawlings ND, et al. Nucleic Acids Res, 2006 Jan 1. PMID 16381862, Free PMC Article
    3. Interaction network containing conserved and essential protein complexes in Escherichia coli. Butland G, et al. Nature, 2005 Feb 3. PMID 15690043
    4. Large-scale identification of protein-protein interaction of Escherichia coli K-12. Arifuzzaman M, et al. Genome Res, 2006 May. PMID 16606699, Free PMC Article
    5. Biogenesis and iron-dependency of ribosomal RNA hydroxylation. Kimura S, et al. Nucleic Acids Res, 2017 Dec 15. PMID 29069499, Free PMC Article

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within rRNA modification IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in rRNA processing IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    23S rRNA 5-hydroxycytidine C2501 synthase

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      1506781..1508742
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_415952.2 23S rRNA 5-hydroxycytidine C2501 synthase [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_415952.2

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A831GSM6
      Conserved Domains (2) summary
      COG0826
      Location:2 → 352
      PrtC; Collagenase-like protease, PrtC family [Posttranslational modification, protein turnover, chaperones]
      pfam12392
      Location:390 → 500
      DUF3656; Collagenase
    Nucleotide Protein
    Heading Accession and Version

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