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    ynfA putative transporter YnfA [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 946125, updated on 17-Dec-2024

    Summary

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    Official Symbol
    ynfA
    Official Full Name
    putative transporter YnfA
    Primary source
    ECOCYC:G6840
    Locus tag
    b1582
    See related
    ASAP:ABE-0005279
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK1577
    Summary
    Topology mapped using protein fusions. [More information is available at EcoGene: EG13839]. Protein topology in the inner membrane has been determined . [More information is available at EcoCyc: G6840].
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    Genomic context

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    Sequence:
    NC_000913.3 (1655347..1655673, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene putative zinc-binding dehydrogenase RspB Neighboring gene mandelate racemase/muconate lactonizing enzyme family protein RspA Neighboring gene DUF1283 domain-containing protein YnfB Neighboring gene spermidine N-acetyltransferase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome-scale identification of conditionally essential genes in E. coli by DNA microarrays. Tong X, et al. Biochem Biophys Res Commun, 2004 Sep 10. PMID 15313213
    2. Evidence against the selfish operon theory. Pál C, et al. Trends Genet, 2004 Jun. PMID 15145575
    3. Microevolutionary genomics of bacteria. Jordan IK, et al. Theor Popul Biol, 2002 Jun. PMID 12167363
    4. Identification and evolution of dual-topology membrane proteins. Rapp M, et al. Nat Struct Mol Biol, 2006 Feb. PMID 16429150
    5. Experimental determination and system level analysis of essential genes in Escherichia coli MG1655. Gerdes SY, et al. J Bacteriol, 2003 Oct. PMID 13129938, Free PMC Article

    See all (17) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    is_active_in plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in plasma membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    putative transporter YnfA

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      1655347..1655673 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_416099.1 putative transporter YnfA [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_416099.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A3L5H0G2
      Conserved Domains (1) summary
      PRK02237
      Location:1 → 107
      PRK02237; YnfA family protein
    Nucleotide Protein
    Heading Accession and Version

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