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    rfbD dTDP-4-dehydrorhamnose reductase [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 947117, updated on 3-Dec-2024

    Summary

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    Official Symbol
    rfbD
    Official Full Name
    dTDP-4-dehydrorhamnose reductase
    Primary source
    ECOCYC:EG12411
    Locus tag
    b2040
    See related
    ASAP:ABE-0006764
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK2034; rmlD
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    Genomic context

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    Sequence:
    NC_000913.3 (2111077..2111976, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene polyisoprenol-linked O16-antigen repeat unit flippase Neighboring gene dTDP-4-dehydrorhamnose 3,5-epimerase Neighboring gene glucose-1-phosphate thymidylyltransferase 1 Neighboring gene dTDP-glucose 4,6-dehydratase 1 Neighboring gene UTP:glucose-1-phosphate uridylyltransferase, low activity Neighboring gene putative colanic acid biosynthesis protein WcaM

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Escherichia coli K12 regains its O antigen. Liu D, et al. Microbiology (Reading), 1994 Jan. PMID 7512872
    2. Molecular typing of Escherichia coli strains isolated from food in Casablanca (Morocco). Badri S, et al. Cell Mol Biol (Noisy-le-grand), 2009 Jun 15. PMID 19656466
    3. Function of the rfb gene cluster and the rfe gene in the synthesis of O antigen by Shigella dysenteriae 1. Klena JD, et al. Mol Microbiol, 1993 Jul. PMID 7692219
    4. Sequence and analysis of the O antigen gene (rfb) cluster of Escherichia coli O111. Bastin DA, et al. Gene, 1995 Oct 16. PMID 7590310
    5. Structure of the O antigen of Escherichia coli K-12 and the sequence of its rfb gene cluster. Stevenson G, et al. J Bacteriol, 1994 Jul. PMID 7517391, Free PMC Article

    See all (12) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables dTDP-4-dehydrorhamnose reductase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables dTDP-4-dehydrorhamnose reductase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables dTDP-4-dehydrorhamnose reductase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables oxidoreductase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within O antigen biosynthetic process EXP
    Inferred from Experiment
    more info
    		 PubMed 
    involved_in O antigen biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in dTDP-rhamnose biosynthetic process IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in dTDP-rhamnose biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in lipopolysaccharide biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in lipopolysaccharide biosynthetic process ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    involved_in polysaccharide biosynthetic process IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in polysaccharide biosynthetic process ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cytosol IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in cytosol IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    dTDP-4-dehydrorhamnose reductase
    NP_416544.1

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      2111077..2111976 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_416544.1 dTDP-4-dehydrorhamnose reductase [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_416544.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      Q3IA88
      Conserved Domains (1) summary
      PRK09987
      Location:1 → 299
      PRK09987; dTDP-4-dehydrorhamnose reductase; Provisional
    Nucleotide Protein
    Heading Accession and Version

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